Rh4AG047900

Dymeclin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0022740
Physical Location & Seq
Reverse (-)
10102432 .. 10103477
1046 bp
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UTR
Exon/CDS
Intron
Rh4AG047900.1

Sequence Viewer

Length: 405 bp
ATGGTCATTACTCTGATAAGGACAGTGCAGTATAACCTATCTGAGTTGCAGGATGTTTATCTCCATACAACTTGTCTAGCAACTTTGGCAAACATGGCACCTCATGTCCACCGTTTGAGTGCATATGCATCCCAGAGATTGGTCAGCCTATTTGATATGCTCTTTTGGAAGTATAACAAACTAGCAGAGGTGTGTGATAATCAGATGACATTAGCCAAAGGCAACTCAATAGAAGACGATACTTCAACGGAGATGCATATATATACCGACTTCTTGAGACTTGTCCTTGAAATATTAAATGCAATTTTGACATATGCTCTGCCACGGAATCCTGAGGTTATATATGCGTTAAATGCACAGGCAGGAAGTATTTCAGCCTTTCAGGAATCATCCACATTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dymeclin

Protein Analysis

134

Amino Acids

15.22

Weight (kDa)

5.17

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dymeclin PF09742 1 - 134 5.1e-43 Dyggve-Melchior-Clausen syndrome protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022740)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0393601
rosa_samantha Rh4AG047900 Rh4CG051200
rosa_wichuraiana Rw4G003780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 97
AccB7I CCANNNNNTGG 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 2 cut(s) 246, 290
Alw26I GTCTC 1 cut(s) 271
Asp700I GAANNNNTTC 1 cut(s) 370
AxyI CCTNAGG 1 cut(s) 333
BanI GGYRCC 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 271
BfaI CTAG 2 cut(s) 77, 182
BmiI GGNNCC 1 cut(s) 99
BmsI GCATC 2 cut(s) 137, 243
BpiI GAAGAC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 295
BsaBI GATNNNNATC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse21I CCTNAGG 1 cut(s) 333
Bse8I GATNNNNATC 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 3 cut(s) 58, 128, 389
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 33, 324
BsgI GTGCAG 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 271
BspCNI CTCAG 2 cut(s) 34, 325
BspLI GGNNCC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 25, 113
BstDEI CTNAG 2 cut(s) 42, 333
BstDSI CCRYGG 1 cut(s) 323
BstF5I GGATG 3 cut(s) 58, 128, 389
BstMAI GTCTC 1 cut(s) 271
BstMWI GCNNNNNNNGC 3 cut(s) 86, 95, 353
BstV2I GAAGAC 1 cut(s) 240
Bsu36I CCTNAGG 1 cut(s) 333
BtgI CCRYGG 1 cut(s) 323
BtsCI GGATG 3 cut(s) 58, 128, 389
BtsIMutI CAGTG 1 cut(s) 30
CviAII CATG 2 cut(s) 94, 104
CviJI RGCY 3 cut(s) 147, 215, 377
CviKI_1 RGCY 3 cut(s) 147, 215, 377
DdeI CTNAG 2 cut(s) 42, 333
Eco81I CCTNAGG 1 cut(s) 333
EcoT22I ATGCAT 2 cut(s) 130, 258
FaeI CATG 2 cut(s) 97, 107
FatI CATG 2 cut(s) 93, 103
FauNDI CATATG 2 cut(s) 124, 313
FokI GGATG 3 cut(s) 65, 115, 376
FspBI CTAG 2 cut(s) 77, 182
Hin1II CATG 2 cut(s) 97, 107
HinfI GANTC 2 cut(s) 328, 386
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 3 cut(s) 15, 43, 204
Hpy188III TCNNGA 3 cut(s) 274, 332, 383
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4III ACNGT 2 cut(s) 25, 113
HpyCH4V TGCA 7 cut(s) 28, 49, 122, 128, 256, 302, 356
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 95, 353
HpyF3I CTNAG 2 cut(s) 42, 333
Hsp92II CATG 2 cut(s) 97, 107
LpnPI CCDG 6 cut(s) 35, 146, 344, 345, 348, 368
LweI GCATC 2 cut(s) 137, 243
MaeI CTAG 2 cut(s) 77, 182
MboII GAAGA 1 cut(s) 245
MluCI AATT 1 cut(s) 303
MnlI CCTC 3 cut(s) 111, 181, 328
Mph1103I ATGCAT 2 cut(s) 130, 258
MroXI GAANNNNTTC 1 cut(s) 370
MseI TTAA 2 cut(s) 296, 350
MslI CAYNNNNRTG 1 cut(s) 400
MwoI GCNNNNNNNGC 3 cut(s) 86, 95, 353
NdeI CATATG 2 cut(s) 124, 313
NlaIII CATG 2 cut(s) 97, 107
NlaIV GGNNCC 1 cut(s) 99
NsiI ATGCAT 2 cut(s) 130, 258
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 2 cut(s) 328, 386
PflMI CCANNNNNTGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 400
SaqAI TTAA 2 cut(s) 296, 350
SetI ASST 4 cut(s) 39, 103, 192, 339
SfaNI GCATC 2 cut(s) 137, 243
SmiMI CAYNNNNRTG 1 cut(s) 400
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
Sse9I AATT 1 cut(s) 303
SspI AATATT 1 cut(s) 294
SspMI CTAG 2 cut(s) 77, 182
TaaI ACNGT 2 cut(s) 25, 113
TasI AATT 1 cut(s) 303
TfiI GAWTC 2 cut(s) 328, 386
Tru1I TTAA 2 cut(s) 296, 350
Tru9I TTAA 2 cut(s) 296, 350
TscAI CASTG 1 cut(s) 30
TspGWI ACGGA 2 cut(s) 263, 340
TspRI CASTG 1 cut(s) 30
Van91I CCANNNNNTGG 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 370
XspI CTAG 2 cut(s) 77, 182
Zsp2I ATGCAT 2 cut(s) 130, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.