Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0032619

Physical Location & Seq

Genomic Coordinates Reverse (-)

23583560 .. 23586536

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG108300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAAATACATTAGGACAAACAGCCTGAAAAGGCTATTCTCACTCAAACGCAGAAGCTTGGAAGAAGTTGCAAGCCCACCAAGTGTGTGCTGTAATGTTGAAGAGAGCAATGAAGGTCTCAAGAATGTTGAAGCAATAGAGCTTTCTCCAAGACCCACATGGAAGTGCTTCTCCTTTGAAGAGATTTCAGCTGCCACCAATGGTTTCAGCTCAGAGAATTTGGTTGGGAAAGGAGGATATGCAGAGGTGTATAGAGGTGTTCTGAAAGGTAATGAGGAAATTGCTGTGAAGAGGATCACAAAAACTGTGACTGATGAAAGGAAAGAGAAGGAGTTCCTGAATGAGATTGGAACTATTGGCCATGCAAAACCAATATTAAACCAGGGAGAGATTGATCAGCTAGTAGATCCAAGGCTTAGAGGGGTCTATGATGTTACACAGCTGAAAAGACTTGCCTTTGCAGGATCTCTCTGCATTCGAGCATCGCCCACATGGCGTCCTACCATGAGCGAGGTGTTGGAGGTTATGGAATTAGAAGGTGAAATAGACGAAGAGAGGTGGAAGATGCCAGACGAGGAAGAAGAGCATGATGAGTTCTGGGGTTTTGAAGATCTGGAATATGAGTTTGACAGTTCCTTCTCTGTTTCACCCCATGATTCCATTTCTACAAGAAGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

226

Amino Acids

25.82

Weight (kDa)

4.88

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0032619)

Species	Orthologous Gene IDs
rosa_samantha	Rh4AG108300 Rh4DG100000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	302, 401, 472
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	496
AdeI	CACNNNGTG	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	101, 131, 179, 608
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	6 cut(s)	57, 142, 191, 210, 400, 442
AluI	AGCT	6 cut(s)	57, 142, 191, 210, 400, 442
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	3 cut(s)	302, 401, 472
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	217
Asp700I	GAANNNNTTC	2 cut(s)	167, 332
AsuHPI	GGTGA	2 cut(s)	551, 639
BalI	TGGCCA	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	383
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	401
BglI	GCCNNNNNGGC	1 cut(s)	493
BglII	AGATCT	1 cut(s)	610
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	383
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	491, 555
BpuEI	CTTGAG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	496
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	382, 410
Bse3DI	GCAATG	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	2 cut(s)	382, 410
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	1 cut(s)	360
BsmAI	GTCTC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	1 cut(s)	360
Bso31I	GGTCTC	1 cut(s)	122
Bsp143I	GATC	5 cut(s)	294, 394, 406, 464, 610
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	1 cut(s)	224
BspPI	GGATC	3 cut(s)	302, 401, 472
BspQI	GCTCTTC	1 cut(s)	576
BspTNI	GGTCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	382, 410
BssMI	GATC	5 cut(s)	294, 394, 406, 464, 610
BssNI	GRCGYC	1 cut(s)	496
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	307, 632
Bst6I	CTCTTC	5 cut(s)	96, 174, 284, 546, 576
BstACI	GRCGYC	1 cut(s)	496
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	211, 416
BstKTI	GATC	5 cut(s)	297, 397, 409, 467, 613
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	5 cut(s)	294, 394, 406, 464, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	3 cut(s)	406, 464, 610
BstYI	RGATCY	3 cut(s)	406, 464, 610
BsuRI	GGCC	1 cut(s)	360
BtgZI	GCGATG	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	73
CseI	GACGC	1 cut(s)	485
CviAII	CATG	6 cut(s)	159, 362, 492, 505, 587, 653
DdeI	CTNAG	2 cut(s)	211, 416
DpnI	GATC	5 cut(s)	296, 396, 408, 466, 612
DpnII	GATC	5 cut(s)	294, 394, 406, 464, 610
DraIII	CACNNNGTG	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	358
Eam1104I	CTCTTC	5 cut(s)	96, 174, 284, 546, 576
EarI	CTCTTC	5 cut(s)	96, 174, 284, 546, 576
Eco130I	CCWWGG	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	6 cut(s)	162, 365, 495, 508, 590, 656
FatI	CATG	6 cut(s)	158, 361, 491, 504, 586, 652
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	360
HgaI	GACGC	1 cut(s)	485
Hin1I	GRCGYC	1 cut(s)	496
Hin1II	CATG	6 cut(s)	162, 365, 495, 508, 590, 656
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	1 cut(s)	656
HphI	GGTGA	2 cut(s)	551, 639
Hpy188I	TCNGA	2 cut(s)	214, 264
Hpy188III	TCNNGA	3 cut(s)	121, 337, 614
HpyAV	CCTTC	4 cut(s)	107, 322, 530, 646
HpyCH4III	ACNGT	2 cut(s)	307, 632
HpyCH4V	TGCA	5 cut(s)	71, 242, 365, 461, 474
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpyF3I	CTNAG	2 cut(s)	211, 416
Hsp92I	GRCGYC	1 cut(s)	496
Hsp92II	CATG	6 cut(s)	162, 365, 495, 508, 590, 656
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	5 cut(s)	294, 394, 406, 464, 610
LguI	GCTCTTC	1 cut(s)	576
LpnPI	CCDG	8 cut(s)	38, 350, 368, 395, 447, 582, 583, 599
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	2 cut(s)	491, 555
MaeI	CTAG	1 cut(s)	401
MaeIII	GTNAC	2 cut(s)	307, 433
MalI	GATC	5 cut(s)	296, 396, 408, 466, 612
MboI	GATC	5 cut(s)	294, 394, 406, 464, 610
MboII	GAAGA	9 cut(s)	74, 113, 191, 301, 563, 574, 590, 593, 620
MflI	RGATCY	3 cut(s)	406, 464, 610
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	3 cut(s)	217, 279, 530
MluNI	TGGCCA	1 cut(s)	360
MmeI	TCCRAC	1 cut(s)	498
Mox20I	TGGCCA	1 cut(s)	360
MroXI	GAANNNNTTC	2 cut(s)	167, 332
MscI	TGGCCA	1 cut(s)	360
MseI	TTAA	2 cut(s)	377, 679
MslI	CAYNNNNRTG	1 cut(s)	163
Msp20I	TGGCCA	1 cut(s)	360
MspA1I	CMGCKG	2 cut(s)	191, 442
MspR9I	CCNGG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	1 cut(s)	493
NdeII	GATC	5 cut(s)	294, 394, 406, 464, 610
NlaIII	CATG	6 cut(s)	162, 365, 495, 508, 590, 656
NmuCI	GTSAC	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	576
PctI	GAATGC	1 cut(s)	474
PdmI	GAANNNNTTC	2 cut(s)	167, 332
PfeI	GAWTC	1 cut(s)	656
PkrI	GCNGC	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PsuI	RGATCY	3 cut(s)	406, 464, 610
PvuII	CAGCTG	2 cut(s)	191, 442
RseI	CAYNNNNRTG	1 cut(s)	163
SapI	GCTCTTC	1 cut(s)	576
SaqAI	TTAA	2 cut(s)	377, 679
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	5 cut(s)	294, 394, 406, 464, 610
ScrFI	CCNGG	1 cut(s)	383
SfaNI	GCATC	2 cut(s)	491, 555
SmiMI	CAYNNNNRTG	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	3 cut(s)	217, 279, 530
SspI	AATATT	1 cut(s)	375
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	307, 632
TaqI	TCGA	1 cut(s)	478
TasI	AATT	3 cut(s)	217, 279, 530
TfiI	GAWTC	1 cut(s)	656
Tru1I	TTAA	2 cut(s)	377, 679
Tru9I	TTAA	2 cut(s)	377, 679
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	17, 126, 330
XapI	RAATTY	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156
XmnI	GAANNNNTTC	2 cut(s)	167, 332
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.