Rh4BG137000

positive regulation of cell-substrate adhesion

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0030460
Physical Location & Seq
Forward (+)
24273891 .. 24274492
602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG137000.1

Sequence Viewer

Length: 399 bp
ATGAAAGAGGTGCTTGAAATGCATGTCAATATGTCGAACAAGTGGTGTGGTCTAGCAGAAGAAGTCTTTGATAGCCTTTACGGTTTGTCCTCTTTGCAGATTTTGGATCTGAGTGCAAACAATCTTTTGATCATATCTAATGAAATCGGTCGCTTAACCTCTTTGCAATTGCATTTGAAGAACAAAATTGTGAGTATACCAAATGAAATTGGTCATTTATCCTCTTTGCAGCTTTTAGATTTGAGTGACAACAACTTCATGAGTATACCTGAGAGCATCTCTCATCTTTCTGAGCTTACTGAACTTCGCTTGTTTAGATGTAGAGGCGTCGCGGCGGGTGGTGGTGGCAGGAGGATGATTGTTGGCAACGAGGGAGGAGGCCATGGAAAGGACCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04064 ko04115 ko04210 map04064 map04115 map04210
Pfam Domains
Protein Families
Death LRR_8 Peptidase_S68 ZU5

Protein Analysis

132

Amino Acids

14.48

Weight (kDa)

5.92

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 22 - 107 6.9e-11 Leucine-rich repeat region
LRR_8 PF13855 51 - 107 2.1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0030460)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0183511
rosa_samantha Rh4BG137000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 196, 265
AccII CGCG 1 cut(s) 332
AciI CCGC 2 cut(s) 332, 335
AclWI GGATC 1 cut(s) 114
AcyI GRCGYC 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 388
AgsI TTSAA 2 cut(s) 17, 178
AluBI AGCT 2 cut(s) 232, 295
AluI AGCT 2 cut(s) 232, 295
AlwI GGATC 1 cut(s) 114
AoxI GGCC 1 cut(s) 379
ApeKI GCWGC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 391
AvaII GGWCC 1 cut(s) 391
BbvI GCAGC 1 cut(s) 241
BclI TGATCA 1 cut(s) 129
BfaI CTAG 1 cut(s) 53
BisI GCNGC 2 cut(s) 230, 333
BlsI GCNGC 2 cut(s) 231, 334
Bme18I GGWCC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 391
BmsI GCATC 1 cut(s) 285
BplI GAGNNNNNCTC 4 cut(s) 263, 295, 265, 297
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 382
Bsc4I CCNNNNNNNGG 1 cut(s) 388
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMII CTCAG 3 cut(s) 101, 261, 282
BseRI GAGGAG 1 cut(s) 390
BseXI GCAGC 1 cut(s) 241
Bsh1236I CGCG 1 cut(s) 332
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 1 cut(s) 381
BsiEI CGRYCG 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 388
BsnI GGCC 1 cut(s) 381
Bsp143I GATC 2 cut(s) 106, 129
Bsp19I CCATGG 1 cut(s) 382
BspACI CCGC 2 cut(s) 332, 335
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 3 cut(s) 102, 262, 283
BspFNI CGCG 1 cut(s) 332
BspHI TCATGA 1 cut(s) 258
BspPI GGATC 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 2 cut(s) 106, 129
BssNAI GTATAC 2 cut(s) 197, 266
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 382
Bst1107I GTATAC 2 cut(s) 197, 266
Bst4CI ACNGT 2 cut(s) 83, 395
BstACI GRCGYC 1 cut(s) 327
BstDEI CTNAG 3 cut(s) 110, 270, 291
BstDSI CCRYGG 1 cut(s) 382
BstF5I GGATG 1 cut(s) 360
BstFNI CGCG 1 cut(s) 332
BstKTI GATC 2 cut(s) 109, 132
BstMBI GATC 2 cut(s) 106, 129
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNSI RCATGY 1 cut(s) 26
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BstZ17I GTATAC 2 cut(s) 197, 266
BsuRI GGCC 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 382
BtsCI GGATG 1 cut(s) 360
CciI TCATGA 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 391
CseI GACGC 1 cut(s) 316
CspCI CAANNNNNGTGG 2 cut(s) 28, 63
CviAII CATG 3 cut(s) 23, 259, 383
CviJI RGCY 4 cut(s) 75, 232, 295, 381
CviKI_1 RGCY 4 cut(s) 75, 232, 295, 381
DdeI CTNAG 3 cut(s) 110, 270, 291
DpnI GATC 2 cut(s) 108, 131
DpnII GATC 2 cut(s) 106, 129
Eco130I CCWWGG 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 382
EcoT22I ATGCAT 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 3 cut(s) 26, 262, 386
FaiI YATR 7 cut(s) 24, 32, 134, 197, 260, 266, 384
FalI AAGNNNNNCTT 1 cut(s) 29
FatI CATG 3 cut(s) 22, 258, 382
FauI CCCGC 1 cut(s) 328
FbaI TGATCA 1 cut(s) 129
FblI GTMKAC 2 cut(s) 196, 265
Fnu4HI GCNGC 2 cut(s) 230, 333
FokI GGATG 1 cut(s) 367
Fsp4HI GCNGC 2 cut(s) 230, 333
FspBI CTAG 1 cut(s) 53
GluI GCNGC 2 cut(s) 230, 333
HaeIII GGCC 1 cut(s) 381
HgaI GACGC 1 cut(s) 316
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 3 cut(s) 26, 262, 386
Hpy166II GTNNAC 2 cut(s) 197, 266
Hpy188I TCNGA 2 cut(s) 111, 292
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 2 cut(s) 197, 266
Hpy99I CGWCG 1 cut(s) 332
HpyCH4III ACNGT 2 cut(s) 83, 395
HpyCH4V TGCA 6 cut(s) 22, 97, 116, 166, 172, 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 3 cut(s) 110, 270, 291
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 3 cut(s) 26, 262, 386
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 2 cut(s) 106, 129
LpnPI CCDG 2 cut(s) 282, 334
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 285
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 245
MalI GATC 2 cut(s) 108, 131
MboI GATC 2 cut(s) 106, 129
MboII GAAGA 2 cut(s) 71, 190
MfeI CAATTG 1 cut(s) 167
MflI RGATCY 1 cut(s) 106
MluCI AATT 3 cut(s) 167, 186, 207
MnlI CCTC 8 cut(s) 100, 169, 232, 317, 345, 364, 368, 371
Mph1103I ATGCAT 1 cut(s) 24
MseI TTAA 1 cut(s) 155
MunI CAATTG 1 cut(s) 167
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 1 cut(s) 19
NcoI CCATGG 1 cut(s) 382
NdeII GATC 2 cut(s) 106, 129
NlaIII CATG 3 cut(s) 26, 262, 386
NmuCI GTSAC 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 24
NspI RCATGY 1 cut(s) 26
PagI TCATGA 1 cut(s) 258
PkrI GCNGC 2 cut(s) 231, 334
PspPI GGNCC 1 cut(s) 391
PsuI RGATCY 1 cut(s) 106
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 2 cut(s) 230, 333
Sau3AI GATC 2 cut(s) 106, 129
Sau96I GGNCC 1 cut(s) 391
SetI ASST 5 cut(s) 12, 161, 234, 271, 297
SfaNI GCATC 1 cut(s) 285
SinI GGWCC 1 cut(s) 391
Sse9I AATT 3 cut(s) 167, 186, 207
SsiI CCGC 2 cut(s) 332, 335
SspMI CTAG 1 cut(s) 53
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 2 cut(s) 83, 395
TaqI TCGA 1 cut(s) 35
TaqII GACCGA 1 cut(s) 137
TasI AATT 3 cut(s) 167, 186, 207
TauI GCSGC 1 cut(s) 335
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 4 cut(s) 17, 156, 219, 247
VpaK11BI GGWCC 1 cut(s) 391
XceI RCATGY 1 cut(s) 26
XmiI GTMKAC 2 cut(s) 196, 265
XspI CTAG 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.