Rh4BG341000

Wall-associated receptor kinase C-terminal

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
50359141 .. 50359756
616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG341000.1

Sequence Viewer

Length: 297 bp
ATGACAATTGCAGTAGCAGACTTGGCTTTTCAATGTCTTCGGCAGGATAGGGATGCAAGGCCTAACATGTGGGAGGTTTTGGAGGCTTTGGAGAAGACAGAAAGCAGGAACGATGTACCAAAGAATCTAAACCCAGCATTCTGTGATGCAGGGATGGGAGAGAGTATCCAGCCATCTCCTTCACCAGATTGTGACCGGATTGGGTCGTTGAAGAGCACGAAGGCACAATCTTCACCAAATTCCGTGATGGAAAAATGGTCTAGCACTAGGTCTACTACACCTAATGCCAGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

98

Amino Acids

10.69

Weight (kDa)

5.01

Isoelectric Point (pI)

62.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0034217)

Species Orthologous Gene IDs
rosa_samantha Rh4BG341000 Rh4CG355900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 238
AfaI GTAC 1 cut(s) 117
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 2 cut(s) 32, 211
Alw21I GWGCWC 1 cut(s) 218
AlwNI CAGNNNCTG 1 cut(s) 294
AoxI GGCC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 238
AsuHPI GGTGA 2 cut(s) 174, 225
BbsI GAAGAC 2 cut(s) 29, 101
Bbv12I GWGCWC 1 cut(s) 218
BccI CCATC 3 cut(s) 148, 181, 241
BciVI GTATCC 1 cut(s) 176
BfaI CTAG 2 cut(s) 261, 267
BfuI GTATCC 1 cut(s) 176
BmsI GCATC 2 cut(s) 43, 136
BpiI GAAGAC 2 cut(s) 29, 101
BsaWI WCCGGW 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 288
BseGI GGATG 2 cut(s) 58, 159
BseNI ACTGG 1 cut(s) 288
BseYI CCCAGC 1 cut(s) 133
BshFI GGCC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 218
BsiSI CCGG 1 cut(s) 196
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 218
BspANI GGCC 1 cut(s) 61
BspQI GCTCTTC 1 cut(s) 206
BsrI ACTGG 1 cut(s) 288
Bst6I CTCTTC 1 cut(s) 206
BstF5I GGATG 2 cut(s) 58, 159
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 70
BstV2I GAAGAC 2 cut(s) 29, 101
BsuI GTATCC 1 cut(s) 176
BsuRI GGCC 1 cut(s) 61
BtsCI GGATG 2 cut(s) 58, 159
BtsIMutI CAGTG 1 cut(s) 295
CaiI CAGNNNCTG 1 cut(s) 294
Csp6I GTAC 1 cut(s) 116
CviAII CATG 1 cut(s) 67
CviJI RGCY 4 cut(s) 26, 61, 86, 172
CviKI_1 RGCY 4 cut(s) 26, 61, 86, 172
CviQI GTAC 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco147I AGGCCT 1 cut(s) 61
FaeI CATG 1 cut(s) 70
FaiI YATR 1 cut(s) 68
FatI CATG 1 cut(s) 66
FblI GTMKAC 1 cut(s) 272
FokI GGATG 2 cut(s) 65, 166
FspBI CTAG 2 cut(s) 261, 267
GsaI CCCAGC 1 cut(s) 137
HaeIII GGCC 1 cut(s) 61
HapII CCGG 1 cut(s) 196
Hin1II CATG 1 cut(s) 70
HinfI GANTC 1 cut(s) 124
HpaII CCGG 1 cut(s) 196
HphI GGTGA 2 cut(s) 174, 225
Hpy166II GTNNAC 1 cut(s) 273
Hpy8I GTNNAC 1 cut(s) 273
HpyAV CCTTC 2 cut(s) 189, 214
HpyCH4V TGCA 3 cut(s) 11, 56, 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 70
LguI GCTCTTC 1 cut(s) 206
LpnPI CCDG 7 cut(s) 29, 91, 135, 147, 182, 198, 209
LweI GCATC 2 cut(s) 43, 136
MaeI CTAG 2 cut(s) 261, 267
MaeIII GTNAC 1 cut(s) 191
MboII GAAGA 4 cut(s) 29, 106, 222, 223
MfeI CAATTG 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 2 cut(s) 6, 238
MnlI CCTC 2 cut(s) 67, 76
MspI CCGG 1 cut(s) 196
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 23
NlaIII CATG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 191
NspI RCATGY 1 cut(s) 70
PceI AGGCCT 1 cut(s) 61
PciI ACATGT 1 cut(s) 66
PciSI GCTCTTC 1 cut(s) 206
PctI GAATGC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 124
PscI ACATGT 1 cut(s) 66
PspFI CCCAGC 1 cut(s) 133
PstNI CAGNNNCTG 1 cut(s) 294
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 206
SduI GDGCHC 1 cut(s) 218
SetI ASST 3 cut(s) 78, 272, 283
SfaNI GCATC 2 cut(s) 43, 136
Sse9I AATT 2 cut(s) 6, 238
SseBI AGGCCT 1 cut(s) 61
SspMI CTAG 2 cut(s) 261, 267
StuI AGGCCT 1 cut(s) 61
TasI AATT 2 cut(s) 6, 238
TfiI GAWTC 1 cut(s) 124
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 1 cut(s) 295
XapI RAATTY 1 cut(s) 238
XceI RCATGY 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 272
XspI CTAG 2 cut(s) 261, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.