Rh4BG341200

Wall-associated receptor kinase C-terminal

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
50362030 .. 50362664
635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG341200.1

Sequence Viewer

Length: 339 bp
ATGCCAGCAGTTGATATAACTAGGCAGCGGGATGAGATCAATTTATCTAACTTAGCCGTAAACAAGATTCGAAAAGGATTATATAATGAGCTGTTAGATTCATCTCTTGGGTTTGAGTCAGATAATGAAGTTAAAAGGATGACAATTGCAGTAGCAGAGTTGGCATTTCAATGTTTGCAGCAGGACAACAACATGAGGCCTACCATATGTGAAGTTTTGGAGACTTTGAAGAGAATTGAAAGCAGGAACAATGTTCCAGAGAGTTTAAGGGGGGCATTTGAAGATGCTGGGATGAGAAGTCTACAGCCACCACCCTCACCTAAATCCGCGACCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

112

Amino Acids

12.58

Weight (kDa)

5.18

Isoelectric Point (pI)

68.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0025859)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_5G00375860
rosa_samantha Rh4BG341200 Rh4CG356000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 301
AccII CGCG 1 cut(s) 329
AciI CCGC 2 cut(s) 28, 327
AgsI TTSAA 4 cut(s) 170, 229, 239, 281
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 215
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 2 cut(s) 25, 178
AsuHPI GGTGA 1 cut(s) 309
AsuII TTCGAA 1 cut(s) 70
BbvI GCAGC 2 cut(s) 37, 190
BceAI ACGGC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 1 cut(s) 302
BisI GCNGC 2 cut(s) 26, 179
BlsI GCNGC 2 cut(s) 27, 180
BmsI GCATC 1 cut(s) 274
Bpu14I TTCGAA 1 cut(s) 70
BseGI GGATG 3 cut(s) 37, 144, 297
BseXI GCAGC 2 cut(s) 37, 190
BseYI CCCAGC 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 329
BshFI GGCC 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 215
BsnI GGCC 1 cut(s) 199
Bsp119I TTCGAA 1 cut(s) 70
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 2 cut(s) 28, 327
BspANI GGCC 1 cut(s) 199
BspFNI CGCG 1 cut(s) 329
BspT104I TTCGAA 1 cut(s) 70
BssMI GATC 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 52
BstF5I GGATG 3 cut(s) 37, 144, 297
BstFNI CGCG 1 cut(s) 329
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 302
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 37, 190
BsuRI GGCC 1 cut(s) 199
BtsCI GGATG 3 cut(s) 37, 144, 297
Cac8I GCNNGC 1 cut(s) 6
CviAII CATG 1 cut(s) 193
CviJI RGCY 4 cut(s) 56, 91, 199, 307
CviKI_1 RGCY 4 cut(s) 56, 91, 199, 307
DdeI CTNAG 1 cut(s) 52
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco147I AGGCCT 1 cut(s) 199
FaeI CATG 1 cut(s) 196
FaiI YATR 6 cut(s) 17, 82, 84, 194, 206, 208
FatI CATG 1 cut(s) 192
FauI CCCGC 1 cut(s) 21
FauNDI CATATG 1 cut(s) 206
FblI GTMKAC 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 26, 179
FokI GGATG 3 cut(s) 44, 151, 304
Fsp4HI GCNGC 2 cut(s) 26, 179
FspBI CTAG 1 cut(s) 21
GluI GCNGC 2 cut(s) 26, 179
GsaI CCCAGC 1 cut(s) 291
HaeIII GGCC 1 cut(s) 199
Hin1II CATG 1 cut(s) 196
HinfI GANTC 3 cut(s) 67, 98, 116
HphI GGTGA 1 cut(s) 309
Hpy166II GTNNAC 2 cut(s) 61, 302
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 2 cut(s) 61, 302
HpyCH4V TGCA 2 cut(s) 149, 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 52
Hsp92II CATG 1 cut(s) 196
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 5 cut(s) 18, 167, 229, 270, 273
Lsp1109I GCAGC 2 cut(s) 37, 190
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 21
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 2 cut(s) 241, 293
MfeI CAATTG 1 cut(s) 144
MluCI AATT 3 cut(s) 40, 144, 234
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 2 cut(s) 189, 325
MseI TTAA 2 cut(s) 132, 266
MslI CAYNNNNRTG 1 cut(s) 169
MspA1I CMGCKG 1 cut(s) 28
MunI CAATTG 1 cut(s) 144
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeI CATATG 1 cut(s) 206
NdeII GATC 1 cut(s) 36
NlaIII CATG 1 cut(s) 196
NspV TTCGAA 1 cut(s) 70
PceI AGGCCT 1 cut(s) 199
PfeI GAWTC 2 cut(s) 67, 98
PkrI GCNGC 2 cut(s) 27, 180
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 169
SaqAI TTAA 2 cut(s) 132, 266
SatI GCNGC 2 cut(s) 26, 179
Sau3AI GATC 1 cut(s) 36
SchI GAGTC 1 cut(s) 125
SetI ASST 2 cut(s) 93, 322
SfaNI GCATC 1 cut(s) 274
SfcI CTRYAG 1 cut(s) 302
SfuI TTCGAA 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 169
Sse9I AATT 3 cut(s) 40, 144, 234
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 2 cut(s) 28, 327
SspMI CTAG 1 cut(s) 21
StuI AGGCCT 1 cut(s) 199
TaqI TCGA 1 cut(s) 70
TasI AATT 3 cut(s) 40, 144, 234
TfiI GAWTC 2 cut(s) 67, 98
Tru1I TTAA 2 cut(s) 132, 266
Tru9I TTAA 2 cut(s) 132, 266
TseI GCWGC 2 cut(s) 25, 178
TspDTI ATGAA 2 cut(s) 90, 141
XmiI GTMKAC 1 cut(s) 301
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.