Rh4BG389100

Protein kinase 2B, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0034233
Physical Location & Seq
Reverse (-)
54242814 .. 54244336
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG389100.1

Sequence Viewer

Length: 699 bp
ATGGGAAATTGTTGCAGGAAACATCTTCAAGAGCCAAACTCACCGGTTCCCGTTATTTCTCAAACTCCTACTGGCGGCTCTCATCGATCCAAGAAAGTTAATAGAACAACAGTTGGAGACAGAACTACTTCAACTGTTTCCTCAACTTCTGTGGGAGAAACGAAGCGTGAAAAACAGAGATCCCCACTTCAAGAGATCACACATGTTGCTTCAAACACAGATATAGAGAAGCCTAGCAGAGAGAAAAGGCGTGGTTACCGAATTGCTCGAAAAGCTGGGAGTTCTAATATTGAGGGAGTGAACAAGAATGATGGAGTGTTTCATGCTTACTACAACTGCAAGCTACGCTGCTTTTGTTACAGTGACTTGAAAGTGGCCACGCGCAAATTTAGCAGCAGAAATTTAATCGGGCAAGGCGGATTTGGTGATGTATATAAAGGGTATGTGAGTTACTGCACTATGGACTCTGCTGCAAAACCAAATGAGGGACTCGCAATTGCCATCAAAAGGCTCAGAAAGACCGGGACACAAGGCCATGAACAATGGGAGGACTTCAATGCTAAGCTATCAGATTTTGGCCTGGCTAGATATGGACCTCTCTGTGACCAGGACCGCATAATGACAAGGATTCTTGGCACCAAAGGCTATATTGCACCGGAATACATAGGAACTGGTATTCAGCCACTCCCCAACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

232

Amino Acids

25.7

Weight (kDa)

9.68

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0034233)

Species Orthologous Gene IDs
rosa_samantha Rh4BG389100 Rh4CG403600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 635
AccII CGCG 1 cut(s) 382
AciI CCGC 3 cut(s) 75, 417, 613
AclWI GGATC 2 cut(s) 81, 174
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 2 cut(s) 386, 400
AfiI CCNNNNNNNGG 3 cut(s) 74, 485, 507
AflIII ACRYGT 1 cut(s) 202
AgeI ACCGGT 1 cut(s) 43
AgsI TTSAA 6 cut(s) 29, 132, 191, 213, 370, 556
AjnI CCWGG 2 cut(s) 579, 606
AluBI AGCT 3 cut(s) 275, 343, 565
AluI AGCT 3 cut(s) 275, 343, 565
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 2 cut(s) 81, 174
AoxI GGCC 3 cut(s) 375, 532, 577
ApeKI GCWGC 3 cut(s) 348, 393, 470
ApoI RAATTY 2 cut(s) 386, 400
AsiGI ACCGGT 1 cut(s) 43
Asp700I GAANNNNTTC 1 cut(s) 127
AspLEI GCGC 1 cut(s) 384
AspS9I GGNCC 2 cut(s) 593, 610
AsuC2I CCSGG 1 cut(s) 523
AsuHPI GGTGA 2 cut(s) 33, 437
AvaII GGWCC 2 cut(s) 593, 610
BalI TGGCCA 1 cut(s) 377
BanI GGYRCC 1 cut(s) 635
BbvI GCAGC 3 cut(s) 335, 405, 457
BccI CCATC 2 cut(s) 305, 509
BciT130I CCWGG 2 cut(s) 581, 608
BcnI CCSGG 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 2 cut(s) 234, 585
BisI GCNGC 4 cut(s) 76, 349, 394, 471
BlpI GCTNAGC 1 cut(s) 561
BlsI GCNGC 4 cut(s) 77, 350, 395, 472
Bme1390I CCNGG 3 cut(s) 523, 581, 608
Bme18I GGWCC 2 cut(s) 593, 610
BmgT120I GGNCC 2 cut(s) 593, 610
BmiI GGNNCC 2 cut(s) 48, 637
BmrFI CCNGG 3 cut(s) 523, 581, 608
BplI GAGNNNNNCTC 2 cut(s) 23, 55
Bpu1102I GCTNAGC 1 cut(s) 561
BpuMI CCSGG 1 cut(s) 523
Bsa29I ATCGAT 1 cut(s) 85
BsaWI WCCGGW 2 cut(s) 43, 655
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 485, 507
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 2 cut(s) 76, 676
BseBI CCWGG 2 cut(s) 581, 608
BseCI ATCGAT 1 cut(s) 85
BseLI CCNNNNNNNGG 3 cut(s) 74, 485, 507
BseMII CTCAG 1 cut(s) 526
BseNI ACTGG 2 cut(s) 76, 676
BseXI GCAGC 3 cut(s) 335, 405, 457
BseYI CCCAGC 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 439
Bsh1236I CGCG 1 cut(s) 382
BshFI GGCC 3 cut(s) 377, 534, 579
BshNI GGYRCC 1 cut(s) 635
BshTI ACCGGT 1 cut(s) 43
BshVI ATCGAT 1 cut(s) 85
BsiSI CCGG 3 cut(s) 44, 522, 656
BslFI GGGAC 2 cut(s) 501, 538
BslI CCNNNNNNNGG 3 cut(s) 74, 485, 507
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 2 cut(s) 501, 538
BsnI GGCC 3 cut(s) 377, 534, 579
Bsp143I GATC 3 cut(s) 86, 179, 195
Bsp1720I GCTNAGC 1 cut(s) 561
BspACI CCGC 3 cut(s) 75, 417, 613
BspANI GGCC 3 cut(s) 377, 534, 579
BspCNI CTCAG 1 cut(s) 525
BspDI ATCGAT 1 cut(s) 85
BspFNI CGCG 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 48, 637
BspPI GGATC 2 cut(s) 81, 174
BspT107I GGYRCC 1 cut(s) 635
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 2 cut(s) 76, 676
BssAI RCCGGY 1 cut(s) 43
BssMI GATC 3 cut(s) 86, 179, 195
Bst2UI CCWGG 2 cut(s) 581, 608
Bst4CI ACNGT 3 cut(s) 112, 136, 362
BstC8I GCNNGC 1 cut(s) 341
BstDEI CTNAG 2 cut(s) 512, 561
BstEII GGTNACC 1 cut(s) 254
BstFNI CGCG 1 cut(s) 382
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 3 cut(s) 89, 182, 198
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 3 cut(s) 86, 179, 195
BstMWI GCNNNNNNNGC 4 cut(s) 272, 345, 390, 642
BstNI CCWGG 2 cut(s) 581, 608
BstNSI RCATGY 1 cut(s) 206
BstPI GGTNACC 1 cut(s) 254
BstSCI CCNGG 3 cut(s) 521, 579, 606
BstUI CGCG 1 cut(s) 382
BstV1I GCAGC 3 cut(s) 335, 405, 457
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
Bsu15I ATCGAT 1 cut(s) 85
BsuRI GGCC 3 cut(s) 377, 534, 579
BsuTUI ATCGAT 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 341
CfoI GCGC 1 cut(s) 384
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 593, 610
ClaI ATCGAT 1 cut(s) 85
CspAI ACCGGT 1 cut(s) 43
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 3 cut(s) 203, 323, 536
DdeI CTNAG 2 cut(s) 512, 561
DpnI GATC 3 cut(s) 88, 181, 197
DpnII GATC 3 cut(s) 86, 179, 195
EaeI YGGCCR 1 cut(s) 375
EciI GGCGGA 1 cut(s) 432
Eco47I GGWCC 2 cut(s) 593, 610
Eco91I GGTNACC 1 cut(s) 254
EcoO65I GGTNACC 1 cut(s) 254
EcoRII CCWGG 2 cut(s) 579, 606
FaeI CATG 3 cut(s) 206, 326, 539
FaqI GGGAC 2 cut(s) 501, 538
FatI CATG 3 cut(s) 202, 322, 535
Fnu4HI GCNGC 4 cut(s) 76, 349, 394, 471
Fsp4HI GCNGC 4 cut(s) 76, 349, 394, 471
FspBI CTAG 2 cut(s) 234, 585
GlaI GCGC 1 cut(s) 383
GluI GCNGC 4 cut(s) 76, 349, 394, 471
GsaI CCCAGC 1 cut(s) 279
HaeIII GGCC 3 cut(s) 377, 534, 579
HapII CCGG 3 cut(s) 44, 522, 656
HhaI GCGC 1 cut(s) 384
Hin1II CATG 3 cut(s) 206, 326, 539
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HinfI GANTC 3 cut(s) 464, 489, 628
HpaII CCGG 3 cut(s) 44, 522, 656
HphI GGTGA 2 cut(s) 33, 437
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 2 cut(s) 515, 571
Hpy188III TCNNGA 2 cut(s) 29, 191
Hpy8I GTNNAC 1 cut(s) 301
HpyCH4III ACNGT 3 cut(s) 112, 136, 362
HpyCH4V TGCA 5 cut(s) 15, 339, 456, 473, 653
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 345, 390, 642
HpyF3I CTNAG 2 cut(s) 512, 561
Hsp92II CATG 3 cut(s) 206, 326, 539
HspAI GCGC 1 cut(s) 382
Kzo9I GATC 3 cut(s) 86, 179, 195
Lsp1109I GCAGC 3 cut(s) 335, 405, 457
MaeI CTAG 2 cut(s) 234, 585
MaeIII GTNAC 5 cut(s) 254, 356, 362, 449, 602
MalI GATC 3 cut(s) 88, 181, 197
MboI GATC 3 cut(s) 86, 179, 195
MboII GAAGA 1 cut(s) 17
MfeI CAATTG 1 cut(s) 495
MflI RGATCY 1 cut(s) 179
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 5 cut(s) 7, 261, 386, 400, 495
MluNI TGGCCA 1 cut(s) 377
MlyI GAGTC 2 cut(s) 458, 483
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 5 cut(s) 151, 286, 478, 541, 606
Mox20I TGGCCA 1 cut(s) 377
MroXI GAANNNNTTC 1 cut(s) 127
MscI TGGCCA 1 cut(s) 377
MseI TTAA 2 cut(s) 99, 404
Msp20I TGGCCA 1 cut(s) 377
MspI CCGG 3 cut(s) 44, 522, 656
MspR9I CCNGG 3 cut(s) 523, 581, 608
MunI CAATTG 1 cut(s) 495
MvaI CCWGG 2 cut(s) 581, 608
MvnI CGCG 1 cut(s) 382
MwoI GCNNNNNNNGC 4 cut(s) 272, 345, 390, 642
NciI CCSGG 1 cut(s) 523
NdeII GATC 3 cut(s) 86, 179, 195
NlaIII CATG 3 cut(s) 206, 326, 539
NlaIV GGNNCC 2 cut(s) 48, 637
NmuCI GTSAC 2 cut(s) 362, 602
NspI RCATGY 1 cut(s) 206
PciI ACATGT 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 628
PinAI ACCGGT 1 cut(s) 43
PkrI GCNGC 4 cut(s) 77, 350, 395, 472
PleI GAGTC 2 cut(s) 458, 483
PpsI GAGTC 2 cut(s) 458, 483
PscI ACATGT 1 cut(s) 202
Psp6I CCWGG 2 cut(s) 579, 606
PspEI GGTNACC 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 2 cut(s) 579, 606
PspN4I GGNNCC 2 cut(s) 48, 637
PspPI GGNCC 2 cut(s) 593, 610
PsuI RGATCY 1 cut(s) 179
SaqAI TTAA 2 cut(s) 99, 404
SatI GCNGC 4 cut(s) 76, 349, 394, 471
Sau3AI GATC 3 cut(s) 86, 179, 195
Sau96I GGNCC 2 cut(s) 593, 610
SchI GAGTC 2 cut(s) 458, 483
ScrFI CCNGG 3 cut(s) 523, 581, 608
SetI ASST 4 cut(s) 277, 345, 567, 598
SinI GGWCC 2 cut(s) 593, 610
Sse9I AATT 5 cut(s) 7, 261, 386, 400, 495
SsiI CCGC 3 cut(s) 75, 417, 613
SspI AATATT 1 cut(s) 289
SspMI CTAG 2 cut(s) 234, 585
StyD4I CCNGG 3 cut(s) 521, 579, 606
TaaI ACNGT 3 cut(s) 112, 136, 362
TaqI TCGA 2 cut(s) 85, 268
TasI AATT 5 cut(s) 7, 261, 386, 400, 495
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 1 cut(s) 628
Tru1I TTAA 2 cut(s) 99, 404
Tru9I TTAA 2 cut(s) 99, 404
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 2 cut(s) 362, 602
TseI GCWGC 3 cut(s) 348, 393, 470
Tsp45I GTSAC 2 cut(s) 362, 602
TspDTI ATGAA 2 cut(s) 311, 552
TspRI CASTG 1 cut(s) 367
VpaK11BI GGWCC 2 cut(s) 593, 610
XapI RAATTY 2 cut(s) 386, 400
XceI RCATGY 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 127
XspI CTAG 2 cut(s) 234, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.