Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0025786

Physical Location & Seq

Genomic Coordinates Forward (+)

55180607 .. 55184109

Gene Structure 3503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG401100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGATCTTTCAATTTAGTCGGAGTAAATTGAGTGTCCGGGATCAAGAAATTGAGAGAAGGCAAGAAAAGAGAGAGTGGACTCACGAGTCCAACATTGACTTTGTTGGGATTGGGATCGGCGAGGAAGGCTTCGGTGACGCCGAGAATGGGATCTTTGGGAGCCGGTTGGATAGTTCACCACCAGGACATGGATCGCGCGTTGAAGACTGCGGTGGAGCTCCTCCGTTGAAAAAATCGTCAACTTTGGAGAGAGAATCGAAGCTTGGAAGCTTCGGAGCTGCTGGTGGGTTTTCTGCAATTTCCGGCGAATTTGATCGCAATCGGCAAAGACCGAGAAGCTTGGAAGAAGTTGCAAGCCCACCAAGTGTGTGCTGCAATGTTGAAGAGAGCATTGACAGCCTCAAGAACGTTGAAGCAATAGAGCTTTCTCCAAGACGCACATGGAAATGCTTCTCCTTTGAAGAAATTTCAGATACCACTAATGGTTTGAGCTCGGAGAAAGGAGGAACCAGGTCCTCTCTGGAACTGAACATATGCCAGCAAAAATCTTTGCCTCCAGCGGATAGAGGGATAGCTGAACCCGCAGGTCGATTTTCTACTACATGGTTGCCGGTTCGATCCCGGTCTTTTTCTGGAGGCAGAACAACGAAAAAACCAAACTCATCTCAAATGGTGTTTGATGCTAGCAAGCTTACATCAATTAGATTAAAGAAACAAACACAGGCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

243

Amino Acids

26.67

Weight (kDa)

8.28

Isoelectric Point (pI)

62.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025786)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_3G00221020
rosa_samantha	Rh4BG401100 Rh4CG416200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
Acc36I	ACCTGC	1 cut(s)	575
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccII	CGCG	2 cut(s)	196, 198
AciI	CCGC	3 cut(s)	210, 560, 582
AclI	AACGTT	1 cut(s)	408
AclWI	GGATC	5 cut(s)	48, 122, 158, 199, 612
AcsI	RAATTY	2 cut(s)	308, 465
AcyI	GRCGYC	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	147, 188
AgsI	TTSAA	6 cut(s)	11, 203, 229, 383, 413, 461
AjnI	CCWGG	2 cut(s)	181, 509
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	9 cut(s)	218, 262, 270, 278, 339, 424, 492, 575, 691
AluI	AGCT	9 cut(s)	218, 262, 270, 278, 339, 424, 492, 575, 691
Alw21I	GWGCWC	2 cut(s)	220, 494
AlwI	GGATC	5 cut(s)	48, 122, 158, 199, 612
ApeKI	GCWGC	2 cut(s)	278, 372
ApoI	RAATTY	2 cut(s)	308, 465
Asp700I	GAANNNNTTC	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	513
AsuC2I	CCSGG	2 cut(s)	38, 622
AsuHPI	GGTGA	2 cut(s)	146, 168
AsuNHI	GCTAGC	1 cut(s)	683
AvaII	GGWCC	1 cut(s)	513
BanII	GRGCYC	2 cut(s)	220, 494
BauI	CACGAG	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	2 cut(s)	220, 494
BbvI	GCAGC	2 cut(s)	265, 359
BciT130I	CCWGG	2 cut(s)	183, 511
BcnI	CCSGG	2 cut(s)	38, 622
BfaI	CTAG	1 cut(s)	684
BfuAI	ACCTGC	1 cut(s)	575
BisI	GCNGC	2 cut(s)	279, 373
BlsI	GCNGC	2 cut(s)	280, 374
Bme1390I	CCNGG	4 cut(s)	38, 183, 511, 622
Bme18I	GGWCC	1 cut(s)	513
BmgT120I	GGNCC	1 cut(s)	513
BmiI	GGNNCC	2 cut(s)	161, 508
BmrFI	CCNGG	4 cut(s)	38, 183, 511, 622
BmsI	GCATC	1 cut(s)	670
BmtI	GCTAGC	1 cut(s)	687
BpiI	GAAGAC	1 cut(s)	210
BpmI	CTGGAG	2 cut(s)	540, 654
BpuEI	CTTGAG	1 cut(s)	386
BpuMI	CCSGG	2 cut(s)	38, 622
BsaBI	GATNNNNATC	2 cut(s)	113, 318
BsaHI	GRCGYC	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 188
Bse118I	RCCGGY	2 cut(s)	162, 610
Bse3DI	GCAATG	1 cut(s)	382
Bse8I	GATNNNNATC	2 cut(s)	113, 318
BseBI	CCWGG	2 cut(s)	183, 511
BseJI	GATNNNNATC	2 cut(s)	113, 318
BseLI	CCNNNNNNNGG	2 cut(s)	147, 188
BseMI	GCAATG	1 cut(s)	382
BseRI	GAGGAG	1 cut(s)	210
BseXI	GCAGC	2 cut(s)	265, 359
Bsh1236I	CGCG	2 cut(s)	196, 198
BsiHKAI	GWGCWC	2 cut(s)	220, 494
BsiSI	CCGG	5 cut(s)	37, 163, 303, 611, 622
BslI	CCNNNNNNNGG	2 cut(s)	147, 188
Bsp1286I	GDGCHC	2 cut(s)	220, 494
Bsp143I	GATC	7 cut(s)	3, 40, 114, 150, 191, 313, 617
BspACI	CCGC	3 cut(s)	210, 560, 582
BspFNI	CGCG	2 cut(s)	196, 198
BspLI	GGNNCC	2 cut(s)	161, 508
BspMI	ACCTGC	1 cut(s)	575
BspOI	GCTAGC	1 cut(s)	687
BspPI	GGATC	5 cut(s)	48, 122, 158, 199, 612
BsrDI	GCAATG	1 cut(s)	382
BsrFI	RCCGGY	2 cut(s)	162, 610
BssAI	RCCGGY	2 cut(s)	162, 610
BssMI	GATC	7 cut(s)	3, 40, 114, 150, 191, 313, 617
BssNI	GRCGYC	1 cut(s)	138
BssSI	CACGAG	1 cut(s)	83
Bst2BI	CACGAG	1 cut(s)	83
Bst2UI	CCWGG	2 cut(s)	183, 511
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	4 cut(s)	355, 539, 685, 689
BstFNI	CGCG	2 cut(s)	196, 198
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	7 cut(s)	6, 43, 117, 153, 194, 316, 620
BstMBI	GATC	7 cut(s)	3, 40, 114, 150, 191, 313, 617
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 396, 581
BstNI	CCWGG	2 cut(s)	183, 511
BstSCI	CCNGG	4 cut(s)	36, 181, 509, 620
BstUI	CGCG	2 cut(s)	196, 198
BstV1I	GCAGC	2 cut(s)	265, 359
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	575
Cac8I	GCNNGC	4 cut(s)	355, 539, 685, 689
CfoI	GCGC	1 cut(s)	198
Cfr10I	RCCGGY	2 cut(s)	162, 610
Cfr13I	GGNCC	1 cut(s)	513
CseI	GACGC	2 cut(s)	146, 444
CsiI	ACCWGGT	1 cut(s)	509
CviAII	CATG	3 cut(s)	188, 441, 603
DpnI	GATC	7 cut(s)	5, 42, 116, 152, 193, 315, 619
DpnII	GATC	7 cut(s)	3, 40, 114, 150, 191, 313, 617
DraIII	CACNNNGTG	1 cut(s)	365
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Ecl136II	GAGCTC	2 cut(s)	218, 492
Eco24I	GRGCYC	2 cut(s)	220, 494
Eco47I	GGWCC	1 cut(s)	513
Eco53kI	GAGCTC	2 cut(s)	218, 492
EcoICRI	GAGCTC	2 cut(s)	218, 492
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRII	CCWGG	2 cut(s)	181, 509
EcoT38I	GRGCYC	2 cut(s)	220, 494
FaeI	CATG	3 cut(s)	191, 444, 606
FaiI	YATR	5 cut(s)	189, 442, 533, 535, 604
FatI	CATG	3 cut(s)	187, 440, 602
FauI	CCCGC	1 cut(s)	589
FauNDI	CATATG	1 cut(s)	533
Fnu4HI	GCNGC	2 cut(s)	279, 373
FriOI	GRGCYC	2 cut(s)	220, 494
Fsp4HI	GCNGC	2 cut(s)	279, 373
FspBI	CTAG	1 cut(s)	684
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	2 cut(s)	279, 373
GsuI	CTGGAG	2 cut(s)	540, 654
HapII	CCGG	5 cut(s)	37, 163, 303, 611, 622
HgaI	GACGC	2 cut(s)	146, 444
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	3 cut(s)	191, 444, 606
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HindIII	AAGCTT	4 cut(s)	260, 268, 337, 689
HinfI	GANTC	3 cut(s)	79, 86, 254
HpaII	CCGG	5 cut(s)	37, 163, 303, 611, 622
HphI	GGTGA	2 cut(s)	146, 168
Hpy166II	GTNNAC	3 cut(s)	78, 176, 240
Hpy188I	TCNGA	4 cut(s)	21, 275, 472, 496
Hpy188III	TCNNGA	5 cut(s)	44, 83, 403, 521, 633
Hpy8I	GTNNAC	3 cut(s)	78, 176, 240
HpyAV	CCTTC	2 cut(s)	51, 119
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	3 cut(s)	296, 353, 375
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 396, 581
HpySE526I	ACGT	1 cut(s)	408
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	191, 444, 606
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	7 cut(s)	3, 40, 114, 150, 191, 313, 617
LmnI	GCTCC	4 cut(s)	159, 215, 223, 275
Lsp1109I	GCAGC	2 cut(s)	265, 359
LweI	GCATC	1 cut(s)	670
MabI	ACCWGGT	1 cut(s)	509
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	7 cut(s)	5, 42, 116, 152, 193, 315, 619
MboI	GATC	7 cut(s)	3, 40, 114, 150, 191, 313, 617
MboII	GAAGA	4 cut(s)	215, 356, 395, 473
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	2 cut(s)	220, 494
MluCI	AATT	7 cut(s)	11, 26, 48, 297, 308, 465, 699
MlyI	GAGTC	2 cut(s)	73, 95
MmeI	TCCRAC	2 cut(s)	114, 147
MnlI	CCTC	8 cut(s)	115, 231, 410, 497, 526, 560, 564, 629
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	1 cut(s)	707
MslI	CAYNNNNRTG	1 cut(s)	445
MspA1I	CMGCKG	1 cut(s)	560
MspI	CCGG	5 cut(s)	37, 163, 303, 611, 622
MspR9I	CCNGG	4 cut(s)	38, 183, 511, 622
MvaI	CCWGG	2 cut(s)	183, 511
MvnI	CGCG	2 cut(s)	196, 198
MwoI	GCNNNNNNNGC	3 cut(s)	126, 396, 581
NciI	CCSGG	2 cut(s)	38, 622
NdeI	CATATG	1 cut(s)	533
NdeII	GATC	7 cut(s)	3, 40, 114, 150, 191, 313, 617
NheI	GCTAGC	1 cut(s)	683
NlaIII	CATG	3 cut(s)	191, 444, 606
NlaIV	GGNNCC	2 cut(s)	161, 508
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	254
PflMI	CCANNNNNTGG	1 cut(s)	188
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	280, 374
PleI	GAGTC	2 cut(s)	73, 94
PpsI	GAGTC	2 cut(s)	73, 94
PpuMI	RGGWCCY	1 cut(s)	513
Psp124BI	GAGCTC	2 cut(s)	220, 494
Psp1406I	AACGTT	1 cut(s)	408
Psp5II	RGGWCCY	1 cut(s)	513
Psp6I	CCWGG	2 cut(s)	181, 509
PspGI	CCWGG	2 cut(s)	181, 509
PspN4I	GGNNCC	2 cut(s)	161, 508
PspPI	GGNCC	1 cut(s)	513
PspPPI	RGGWCCY	1 cut(s)	513
PsuI	RGATCY	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	445
SacI	GAGCTC	2 cut(s)	220, 494
SaqAI	TTAA	1 cut(s)	707
SatI	GCNGC	2 cut(s)	279, 373
Sau3AI	GATC	7 cut(s)	3, 40, 114, 150, 191, 313, 617
Sau96I	GGNCC	1 cut(s)	513
SchI	GAGTC	2 cut(s)	73, 95
ScrFI	CCNGG	4 cut(s)	38, 183, 511, 622
SduI	GDGCHC	2 cut(s)	220, 494
SexAI	ACCWGGT	1 cut(s)	509
SfaNI	GCATC	1 cut(s)	670
SinI	GGWCC	1 cut(s)	513
SmiMI	CAYNNNNRTG	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	7 cut(s)	11, 26, 48, 297, 308, 465, 699
SsiI	CCGC	3 cut(s)	210, 560, 582
SspMI	CTAG	1 cut(s)	684
SstI	GAGCTC	2 cut(s)	220, 494
StyD4I	CCNGG	4 cut(s)	36, 181, 509, 620
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	3 cut(s)	257, 589, 616
TaqII	GACCGA	1 cut(s)	346
TasI	AATT	7 cut(s)	11, 26, 48, 297, 308, 465, 699
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	707
Tru9I	TTAA	1 cut(s)	707
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	2 cut(s)	278, 372
Tsp45I	GTSAC	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	213
Van91I	CCANNNNNTGG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	513
XapI	RAATTY	2 cut(s)	308, 465
XcmI	CCANNNNNNNNNTGG	2 cut(s)	438, 517
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.