Rh4BG420800
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
56635568 .. 56636995
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG420800.1

Sequence Viewer

Length: 1428 bp
ATGGGAGCAGGGGCAAAGCACACTGCTTCAAAAAGCACCGCCCGCAAGTCAACCGCTGCAATCCCAAACGTACTAGGAAATTCATCCTTGGCCATAGTAGAACAGCAAGATGTGGTACCTCTCGCTATCAACGCACCGATTGTGTCGTCTTACAACGACAAAATCCGTCCTCTCCTTGATGCAGTGGACAAGCTTCGGAACCTGATGGTTATGGATGAAGGCATCCAGCTCCCAACAATCGTTGTAGTAGGAGACCAGTCCTCTGGAAAGTCAAGCGTCCTTGAATCTCTGGCCGGCATCAACCTGCCACGTGGCCAAGGCATCTGCACCAGGGTGCCACTCATTATGAGGCTGCAGCACCATGCCAGTGTGGAGCCGGAGCTGTCGTTGGAATACAATGGCAGAGTGGACCGCACCAATGAAGACAACATATCTGAAGACATTGTGAAGGCAACTAGTGTCATCGCTGGAGGCGGTAAGGGAATTTCCAATACCCCATTGACATTGCTAGTGAAGAAGAATGGCGTACCGGATTTGACCATGGTGGATCTTCCGGGAATCACTAGAGTTCCGGTTCATGGCCAGCCTGAAAATATCTATGACCAGATAAGAGACATGATCATGGAGTATATCAAGCCGGAAGAGAGCATTATTCTGAATGTTCTGTCTGCAAGTGTTGATTTTACCACTTGTGAATCGATTAGGATGTCGCAGAGCGTGGATAAGACTGGTGAGAGGACACTTGCTGTGGTCACTAAGGTTGACAAGGCTCCGGAGGGACTGTTAGAGAAGGTCACGGCTGATGATGTCAACATTGGACTTGGCTATGTCTGTGTGAGGAACAGAATTGGAGATGAGACTTATGAGGAGGCGAGTGCTATTGCTCACGAGCTGTTTCAAACACATCCTCTTCTTTCCAAGATTGATAAATCTATTGTTGGCATTCCAGTTTTAGCTCAAAAGCTGGTTCAGATTCAAGCTACTAGTATAGCAAGGAATTTGCCGGAAATTGTGAAGAAGATCAATGACAGACTCAATGCTTGCCTTTCCGAGCTGAACAAAATGCCGAGAAGTCTCTCATCTATTGCTGAGGCAATGACGGCTTTTATGCAGATCCTTGGATGTTCAAAGGAGTCACTCAGGAAAATTCTTCTGAGAGGCGAATTTGACGAGTATTCTGATGATAGAAGAATGCACTGCACAGCTCGGTTGGTTGAGATGCTCAATCAATACTCTGATGATCTTTACAAGTGTGCGGAGAGCGACCCCAAGGTCAAGTTTTTGATGGATGAGATCAAGATTTTGGAAGAAGCCAAAGGTATTGCGCTTCCGAATTTTCTTCCTCGCAATGCTTTTCTTTTAATCTTGCAATCAAAAGTGAGGGAGATTTCGAGCATACCTATTGGATCAAGTCTGGAGTTACATTGA

Protein Analysis

475

Amino Acids

52.0

Weight (kDa)

5.66

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 80 - 254 3e-42 Dynamin family
Dynamin_M PF01031 261 - 467 4.4e-42 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0032709)

Species Orthologous Gene IDs
rosa_samantha Rh4AG409700 Rh4BG420800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1271
Acc36I ACCTGC 1 cut(s) 312
Acc65I GGTACC 1 cut(s) 115
AccB1I GGYRCC 2 cut(s) 115, 334
AccIII TCCGGA 1 cut(s) 772
AciI CCGC 6 cut(s) 39, 43, 54, 412, 474, 1256
AclWI GGATC 3 cut(s) 555, 1108, 1414
AcoI YGGCCR 4 cut(s) 90, 291, 313, 580
AcsI RAATTY 6 cut(s) 79, 483, 997, 1146, 1163, 1333
AcuI CTGAAG 1 cut(s) 456
AcvI CACGTG 1 cut(s) 311
AfaI GTAC 3 cut(s) 72, 117, 528
AfiI CCNNNNNNNGG 1 cut(s) 578
AgsI TTSAA 5 cut(s) 30, 284, 899, 977, 1128
AhlI ACTAGT 2 cut(s) 455, 983
AjnI CCWGG 1 cut(s) 329
AleI CACNNNNGTG 1 cut(s) 332
AluBI AGCT 9 cut(s) 193, 229, 382, 892, 956, 964, 980, 1054, 1205
AluI AGCT 9 cut(s) 193, 229, 382, 892, 956, 964, 980, 1054, 1205
Alw26I GTCTC 4 cut(s) 246, 606, 851, 1079
AlwI GGATC 3 cut(s) 555, 1108, 1414
Aor13HI TCCGGA 1 cut(s) 772
AoxI GGCC 4 cut(s) 90, 291, 313, 580
ApeKI GCWGC 3 cut(s) 56, 352, 355
ApoI RAATTY 6 cut(s) 79, 483, 997, 1146, 1163, 1333
Asp718I GGTACC 1 cut(s) 115
AspLEI GCGC 1 cut(s) 1327
AspS9I GGNCC 1 cut(s) 409
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 1 cut(s) 743
AvaII GGWCC 1 cut(s) 409
BalI TGGCCA 3 cut(s) 92, 315, 582
BanI GGYRCC 2 cut(s) 115, 334
BauI CACGAG 1 cut(s) 887
BbrPI CACGTG 1 cut(s) 311
BbsI GAAGAC 2 cut(s) 429, 444
BbvCI CCTCAGC 1 cut(s) 1089
BbvI GCAGC 3 cut(s) 43, 339, 367
BccI CCATC 2 cut(s) 199, 1279
BceAI ACGGC 2 cut(s) 813, 1116
BciT130I CCWGG 1 cut(s) 331
BclI TGATCA 1 cut(s) 618
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 4 cut(s) 246, 606, 851, 1079
BcuI ACTAGT 2 cut(s) 455, 983
BfaI CTAG 5 cut(s) 74, 456, 509, 564, 984
BfmI CTRYAG 1 cut(s) 353
BfuAI ACCTGC 1 cut(s) 312
BisI GCNGC 3 cut(s) 57, 353, 356
BlsI GCNGC 3 cut(s) 58, 354, 357
Bme1390I CCNGG 2 cut(s) 331, 555
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 5 cut(s) 117, 200, 336, 375, 771
BmrFI CCNGG 2 cut(s) 331, 555
BmsI GCATC 5 cut(s) 169, 231, 306, 330, 1209
BpiI GAAGAC 2 cut(s) 429, 444
BpmI CTGGAG 1 cut(s) 489
Bpu10I CCTNAGC 1 cut(s) 1089
BpuMI CCSGG 1 cut(s) 555
Bsa29I ATCGAT 1 cut(s) 698
BsaAI YACGTR 1 cut(s) 311
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 6 cut(s) 87, 316, 330, 540, 1117, 1269
BsaWI WCCGGW 3 cut(s) 529, 571, 772
BsaXI ACNNNNNCTCC 4 cut(s) 371, 401, 767, 797
Bsc4I CCNNNNNNNGG 1 cut(s) 578
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 4 cut(s) 256, 366, 733, 947
Bse3DI GCAATG 3 cut(s) 503, 1101, 1354
BseAI TCCGGA 1 cut(s) 772
BseBI CCWGG 1 cut(s) 331
BseCI ATCGAT 1 cut(s) 698
BseDI CCNNGG 6 cut(s) 87, 316, 330, 540, 1117, 1269
BseGI GGATG 7 cut(s) 83, 220, 222, 711, 904, 1127, 1294
BseLI CCNNNNNNNGG 1 cut(s) 578
BseMI GCAATG 3 cut(s) 503, 1101, 1354
BseMII CTCAG 3 cut(s) 1080, 1145, 1153
BseNI ACTGG 4 cut(s) 256, 366, 733, 947
BseRI GAGGAG 1 cut(s) 881
BseXI GCAGC 3 cut(s) 43, 339, 367
BsgI GTGCAG 2 cut(s) 310, 1183
BshFI GGCC 4 cut(s) 92, 293, 315, 582
BshNI GGYRCC 2 cut(s) 115, 334
BshVI ATCGAT 1 cut(s) 698
BsiSI CCGG 8 cut(s) 294, 377, 530, 554, 572, 638, 773, 1004
BslFI GGGAC 1 cut(s) 792
BslI CCNNNNNNNGG 1 cut(s) 578
BsmAI GTCTC 4 cut(s) 246, 606, 851, 1079
BsmFI GGGAC 1 cut(s) 792
BsmI GAATGC 2 cut(s) 942, 1197
BsnI GGCC 4 cut(s) 92, 293, 315, 582
Bso31I GGTCTC 1 cut(s) 246
Bsp13I TCCGGA 1 cut(s) 772
Bsp143I GATC 7 cut(s) 547, 618, 1020, 1113, 1240, 1293, 1406
Bsp19I CCATGG 1 cut(s) 540
BspACI CCGC 6 cut(s) 39, 43, 54, 412, 474, 1256
BspANI GGCC 4 cut(s) 92, 293, 315, 582
BspCNI CTCAG 3 cut(s) 1081, 1146, 1152
BspDI ATCGAT 1 cut(s) 698
BspEI TCCGGA 1 cut(s) 772
BspLI GGNNCC 5 cut(s) 117, 200, 336, 375, 771
BspMAI CTGCAG 1 cut(s) 357
BspMI ACCTGC 1 cut(s) 312
BspPI GGATC 3 cut(s) 555, 1108, 1414
BspT107I GGYRCC 2 cut(s) 115, 334
BspTNI GGTCTC 1 cut(s) 246
BsrDI GCAATG 3 cut(s) 503, 1101, 1354
BsrFI RCCGGY 1 cut(s) 293
BsrI ACTGG 4 cut(s) 256, 366, 733, 947
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 6 cut(s) 87, 316, 330, 540, 1117, 1269
BssMI GATC 7 cut(s) 547, 618, 1020, 1113, 1240, 1293, 1406
BssSI CACGAG 1 cut(s) 887
BssT1I CCWWGG 5 cut(s) 87, 316, 540, 1117, 1269
Bst2BI CACGAG 1 cut(s) 887
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 783
Bst6I CTCTTC 2 cut(s) 636, 915
BstBAI YACGTR 1 cut(s) 311
BstC8I GCNNGC 4 cut(s) 43, 295, 584, 1042
BstDEI CTNAG 4 cut(s) 756, 1089, 1139, 1154
BstDSI CCRYGG 1 cut(s) 540
BstF5I GGATG 7 cut(s) 83, 220, 222, 711, 904, 1127, 1294
BstHHI GCGC 1 cut(s) 1327
BstKTI GATC 7 cut(s) 550, 621, 1023, 1116, 1243, 1296, 1409
BstMAI GTCTC 4 cut(s) 246, 606, 851, 1079
BstMBI GATC 7 cut(s) 547, 618, 1020, 1113, 1240, 1293, 1406
BstMWI GCNNNNNNNGC 3 cut(s) 42, 131, 1100
BstNI CCWGG 1 cut(s) 331
BstSCI CCNGG 2 cut(s) 329, 553
BstSFI CTRYAG 1 cut(s) 353
BstV1I GCAGC 3 cut(s) 43, 339, 367
BstV2I GAAGAC 2 cut(s) 429, 444
BstX2I RGATCY 2 cut(s) 547, 1113
BstXI CCANNNNNNTGG 1 cut(s) 263
BstYI RGATCY 2 cut(s) 547, 1113
Bsu15I ATCGAT 1 cut(s) 698
BsuRI GGCC 4 cut(s) 92, 293, 315, 582
BsuTUI ATCGAT 1 cut(s) 698
BtgI CCRYGG 1 cut(s) 540
BtgZI GCGATG 1 cut(s) 448
BtsCI GGATG 7 cut(s) 83, 220, 222, 711, 904, 1127, 1294
BtsI GCAGTG 3 cut(s) 21, 189, 1195
BtsIMutI CAGTG 4 cut(s) 21, 189, 373, 1195
BveI ACCTGC 1 cut(s) 312
Cac8I GCNNGC 4 cut(s) 43, 295, 584, 1042
CfoI GCGC 1 cut(s) 1327
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 409
ClaI ATCGAT 1 cut(s) 698
CseI GACGC 1 cut(s) 265
Csp6I GTAC 3 cut(s) 71, 116, 527
CviAII CATG 5 cut(s) 362, 541, 578, 616, 622
CviQI GTAC 3 cut(s) 71, 116, 527
DdeI CTNAG 4 cut(s) 756, 1089, 1139, 1154
DpnI GATC 7 cut(s) 549, 620, 1022, 1115, 1242, 1295, 1408
DpnII GATC 7 cut(s) 547, 618, 1020, 1113, 1240, 1293, 1406
DrdI GACNNNNNNGTC 1 cut(s) 1271
DseDI GACNNNNNNGTC 1 cut(s) 1271
EaeI YGGCCR 4 cut(s) 90, 291, 313, 580
Eam1104I CTCTTC 2 cut(s) 636, 915
EarI CTCTTC 2 cut(s) 636, 915
Eco130I CCWWGG 5 cut(s) 87, 316, 540, 1117, 1269
Eco31I GGTCTC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 456
Eco72I CACGTG 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 329
EcoT14I CCWWGG 5 cut(s) 87, 316, 540, 1117, 1269
ErhI CCWWGG 5 cut(s) 87, 316, 540, 1117, 1269
FaeI CATG 5 cut(s) 365, 544, 581, 619, 625
FaqI GGGAC 1 cut(s) 792
FatI CATG 5 cut(s) 361, 540, 577, 615, 621
FauI CCCGC 1 cut(s) 50
FbaI TGATCA 1 cut(s) 618
Fnu4HI GCNGC 3 cut(s) 57, 353, 356
FokI GGATG 7 cut(s) 70, 209, 227, 718, 891, 1134, 1301
Fsp4HI GCNGC 3 cut(s) 57, 353, 356
FspBI CTAG 5 cut(s) 74, 456, 509, 564, 984
GlaI GCGC 1 cut(s) 1326
GluI GCNGC 3 cut(s) 57, 353, 356
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 4 cut(s) 92, 293, 315, 582
HapII CCGG 8 cut(s) 294, 377, 530, 554, 572, 638, 773, 1004
HgaI GACGC 1 cut(s) 265
HhaI GCGC 1 cut(s) 1327
Hin1II CATG 5 cut(s) 365, 544, 581, 619, 625
Hin6I GCGC 1 cut(s) 1325
HinP1I GCGC 1 cut(s) 1325
HincII GTYRAC 3 cut(s) 51, 763, 811
HindII GTYRAC 3 cut(s) 51, 763, 811
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 6 cut(s) 284, 558, 695, 973, 1032, 1133
HpaII CCGG 8 cut(s) 294, 377, 530, 554, 572, 638, 773, 1004
HphI GGTGA 1 cut(s) 743
Hpy166II GTNNAC 5 cut(s) 51, 187, 409, 763, 811
Hpy188I TCNGA 9 cut(s) 198, 436, 657, 972, 1051, 1155, 1180, 1237, 1332
Hpy188III TCNNGA 6 cut(s) 264, 773, 887, 1141, 1297, 1415
Hpy8I GTNNAC 5 cut(s) 51, 187, 409, 763, 811
HpyAV CCTTC 3 cut(s) 212, 442, 784
HpyCH4III ACNGT 1 cut(s) 783
HpyCH4IV ACGT 2 cut(s) 69, 310
HpyCH4V TGCA 9 cut(s) 59, 182, 327, 355, 671, 1111, 1195, 1200, 1369
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 131, 1100
HpyF3I CTNAG 4 cut(s) 756, 1089, 1139, 1154
HpySE526I ACGT 2 cut(s) 69, 310
Hsp92II CATG 5 cut(s) 365, 544, 581, 619, 625
HspAI GCGC 1 cut(s) 1325
Kpn2I TCCGGA 1 cut(s) 772
KpnI GGTACC 1 cut(s) 119
KroI GCCGGC 1 cut(s) 293
KroNI GCCGGC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 618
Kzo9I GATC 7 cut(s) 547, 618, 1020, 1113, 1240, 1293, 1406
LmnI GCTCC 5 cut(s) 5, 234, 373, 379, 775
Lsp1109I GCAGC 3 cut(s) 43, 339, 367
LweI GCATC 5 cut(s) 169, 231, 306, 330, 1209
MaeI CTAG 5 cut(s) 74, 456, 509, 564, 984
MaeII ACGT 2 cut(s) 69, 310
MaeIII GTNAC 4 cut(s) 751, 793, 1134, 1419
MalI GATC 7 cut(s) 549, 620, 1022, 1115, 1242, 1295, 1408
MboI GATC 7 cut(s) 547, 618, 1020, 1113, 1240, 1293, 1406
MflI RGATCY 2 cut(s) 547, 1113
MlsI TGGCCA 3 cut(s) 92, 315, 582
MluCI AATT 8 cut(s) 79, 483, 846, 997, 1008, 1146, 1163, 1333
MluNI TGGCCA 3 cut(s) 92, 315, 582
MlyI GAGTC 2 cut(s) 1026, 1142
MmeI TCCRAC 1 cut(s) 369
Mox20I TGGCCA 3 cut(s) 92, 315, 582
MroI TCCGGA 1 cut(s) 772
MroNI GCCGGC 1 cut(s) 293
MscI TGGCCA 3 cut(s) 92, 315, 582
MseI TTAA 1 cut(s) 1361
MslI CAYNNNNRTG 3 cut(s) 332, 366, 620
Msp20I TGGCCA 3 cut(s) 92, 315, 582
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 8 cut(s) 294, 377, 530, 554, 572, 638, 773, 1004
MspR9I CCNGG 2 cut(s) 331, 555
Mva1269I GAATGC 2 cut(s) 942, 1197
MvaI CCWGG 1 cut(s) 331
MwoI GCNNNNNNNGC 3 cut(s) 42, 131, 1100
NaeI GCCGGC 1 cut(s) 295
NciI CCSGG 1 cut(s) 555
NcoI CCATGG 1 cut(s) 540
NdeII GATC 7 cut(s) 547, 618, 1020, 1113, 1240, 1293, 1406
NgoMIV GCCGGC 1 cut(s) 293
NlaIII CATG 5 cut(s) 365, 544, 581, 619, 625
NlaIV GGNNCC 5 cut(s) 117, 200, 336, 375, 771
NmeAIII GCCGAG 1 cut(s) 1092
NmuCI GTSAC 3 cut(s) 751, 793, 1134
OliI CACNNNNGTG 1 cut(s) 332
PctI GAATGC 2 cut(s) 942, 1197
PdiI GCCGGC 1 cut(s) 295
PfeI GAWTC 4 cut(s) 284, 558, 695, 973
PfoI TCCNGGA 1 cut(s) 553
PkrI GCNGC 3 cut(s) 58, 354, 357
PleI GAGTC 2 cut(s) 1026, 1141
PmaCI CACGTG 1 cut(s) 311
PmlI CACGTG 1 cut(s) 311
PpsI GAGTC 2 cut(s) 1026, 1141
Ppu21I YACGTR 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 329
PspCI CACGTG 1 cut(s) 311
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 5 cut(s) 117, 200, 336, 375, 771
PspPI GGNCC 1 cut(s) 409
PstI CTGCAG 1 cut(s) 357
PsuI RGATCY 2 cut(s) 547, 1113
RsaI GTAC 3 cut(s) 72, 117, 528
RsaNI GTAC 3 cut(s) 71, 116, 527
RseI CAYNNNNRTG 3 cut(s) 332, 366, 620
SaqAI TTAA 1 cut(s) 1361
SatI GCNGC 3 cut(s) 57, 353, 356
Sau3AI GATC 7 cut(s) 547, 618, 1020, 1113, 1240, 1293, 1406
Sau96I GGNCC 1 cut(s) 409
SchI GAGTC 2 cut(s) 1026, 1142
ScrFI CCNGG 2 cut(s) 331, 555
SfaNI GCATC 5 cut(s) 169, 231, 306, 330, 1209
SfcI CTRYAG 1 cut(s) 353
SinI GGWCC 1 cut(s) 409
SmiMI CAYNNNNRTG 3 cut(s) 332, 366, 620
SpeI ACTAGT 2 cut(s) 455, 983
Sse9I AATT 8 cut(s) 79, 483, 846, 997, 1008, 1146, 1163, 1333
SsiI CCGC 6 cut(s) 39, 43, 54, 412, 474, 1256
SspMI CTAG 5 cut(s) 74, 456, 509, 564, 984
StyD4I CCNGG 2 cut(s) 329, 553
StyI CCWWGG 5 cut(s) 87, 316, 540, 1117, 1269
TaaI ACNGT 1 cut(s) 783
TaiI ACGT 2 cut(s) 72, 313
TaqI TCGA 2 cut(s) 698, 1391
TasI AATT 8 cut(s) 79, 483, 846, 997, 1008, 1146, 1163, 1333
TfiI GAWTC 4 cut(s) 284, 558, 695, 973
Tru1I TTAA 1 cut(s) 1361
Tru9I TTAA 1 cut(s) 1361
TscAI CASTG 4 cut(s) 28, 189, 373, 1202
TseFI GTSAC 3 cut(s) 751, 793, 1134
TseI GCWGC 3 cut(s) 56, 352, 355
Tsp45I GTSAC 3 cut(s) 751, 793, 1134
TspDTI ATGAA 4 cut(s) 72, 231, 435, 566
TspGWI ACGGA 1 cut(s) 155
TspRI CASTG 4 cut(s) 28, 189, 373, 1202
VpaK11BI GGWCC 1 cut(s) 409
XapI RAATTY 6 cut(s) 79, 483, 997, 1146, 1163, 1333
XspI CTAG 5 cut(s) 74, 456, 509, 564, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.