Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0032571

Physical Location & Seq

Genomic Coordinates Reverse (-)

3181346 .. 3187850

Gene Structure 6505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG016600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTCGGAAATGGATCCAATGACAAGTGACAATATTGAGGAGGTCAATGTAGAAAAGAAGATGGATCACCACGCAGACGGTGAAAATTCAAAAATCAAGGGTACTGGAAGTGTTAGTAACAAAGAAATGATTTTCAGAGCAGATAAAATTGATTTGAAAAACTTAGATATACAGCTTGAGAAGCATTTGAGCAGGGTTTGGTCCAAAATTGAGGACAAAAGGCCTAAAGAAGAGTGGGAGATTGATTTAGCTAAATTGGATATAAGATATGTTGTAGCTCAAGGGACCTATGGTACTGTATACAGGGGTATTTATGATGAACAAGATGTTGCAGTGAAGCTGTTGGACTGGGGGGAGGATGGTTATGCCACAGCTGCTGAAACTGCTGCTCTGCGGGCATCATTTCAAAAAGAAGTTGCTGTTTGGCACAAGCTGGACCATCCTAATGTTACAAGGTTCATTGGAGCTTCAATGGGAACTTCTAATCTTAAGATTCCTTCAAAAAACTCTTCAAGCGATGATCCAAATTCTCATCCTGCTAGAGCATGTTGTGTTGTTGTGGAGTTTCTTGCTGGTGGGACACTAAAACAATATTTGATAAAAAACAGAAAAAAGAAACTTGCCTTGAAGGTTGTGATCCAACTTGCTTTGGACCTCTCAAGAGGTCTTAGCTATCTGCATTCCAAGAAAATTGTGCACCGTGATGTCAAAACAGAAAATATGTTGCTGGATATCGATAGAAACTTAAAAATAGCTGATTTTGGTGTTGCTCGCGTTGAAGCTCAAAATCCAAGGGACATGACTGGTGAAACCGGCACCTTAGGATACATGGCTCCAGAGGTATTCATATTAAAACCTTTTATATGCTTTTCTATAGCCATTAAAATATTTTTTTTCACAGAAGGAAGAAACTCTAATGGTGGTGGAAATAAGATTAACCTCCTTAAACTTCTAATTTCATCAATAGACACATTCAATTATACAATTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

330

Amino Acids

37.08

Weight (kDa)

7.69

Isoelectric Point (pI)

23.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	90 - 282	1.6e-30	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	93 - 282	2.5e-32	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0032571)

Species	Orthologous Gene IDs
rosa_samantha	Rh4AG015600 Rh4CG016600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	815
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	774
AciI	CCGC	1 cut(s)	394
AclWI	GGATC	5 cut(s)	8, 21, 72, 515, 631
AcsI	RAATTY	2 cut(s)	85, 526
AfaI	GTAC	2 cut(s)	103, 295
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	9 cut(s)	90, 157, 407, 471, 501, 513, 628, 779, 976
Alw21I	GWGCWC	1 cut(s)	699
Alw44I	GTGCAC	1 cut(s)	695
AlwI	GGATC	5 cut(s)	8, 21, 72, 515, 631
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	221
ApaLI	GTGCAC	1 cut(s)	695
ApeKI	GCWGC	2 cut(s)	374, 386
ApoI	RAATTY	2 cut(s)	85, 526
AspS9I	GGNCC	4 cut(s)	201, 285, 436, 652
AsuHPI	GGTGA	3 cut(s)	59, 92, 818
AvaII	GGWCC	4 cut(s)	201, 285, 436, 652
AxyI	CCTNAGG	1 cut(s)	820
BaeGI	GKGCMC	1 cut(s)	699
BamHI	GGATCC	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	815
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	2 cut(s)	361, 373
BccI	CCATC	3 cut(s)	55, 353, 447
BciVI	GTATCC	1 cut(s)	818
BfaI	CTAG	1 cut(s)	540
BfmI	CTRYAG	1 cut(s)	873
BfrI	CTTAAG	1 cut(s)	488
BfuI	GTATCC	1 cut(s)	818
BisI	GCNGC	2 cut(s)	375, 387
BlsI	GCNGC	2 cut(s)	376, 388
Bme18I	GGWCC	4 cut(s)	201, 285, 436, 652
BmgT120I	GGNCC	4 cut(s)	201, 285, 436, 652
BmiI	GGNNCC	4 cut(s)	15, 286, 817, 834
BmrI	ACTGGG	1 cut(s)	358
BmsI	GCATC	1 cut(s)	407
BmuI	ACTGGG	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	819
BpuEI	CTTGAG	3 cut(s)	197, 264, 643
Bsa29I	ATCGAT	1 cut(s)	735
BsaJI	CCNNGG	1 cut(s)	791
Bse118I	RCCGGY	1 cut(s)	812
Bse1I	ACTGG	3 cut(s)	109, 353, 808
Bse21I	CCTNAGG	1 cut(s)	820
BseCI	ATCGAT	1 cut(s)	735
BseDI	CCNNGG	1 cut(s)	791
BseGI	GGATG	3 cut(s)	364, 439, 532
BseNI	ACTGG	3 cut(s)	109, 353, 808
BseRI	GAGGAG	1 cut(s)	53
BseSI	GKGCMC	1 cut(s)	699
BseXI	GCAGC	2 cut(s)	361, 373
Bsh1236I	CGCG	1 cut(s)	774
BshFI	GGCC	1 cut(s)	223
BshNI	GGYRCC	1 cut(s)	815
BshVI	ATCGAT	1 cut(s)	735
BsiHKAI	GWGCWC	1 cut(s)	699
BsiSI	CCGG	1 cut(s)	813
BslFI	GGGAC	3 cut(s)	298, 592, 809
BsmFI	GGGAC	3 cut(s)	298, 592, 809
BsmI	GAATGC	1 cut(s)	679
BsnI	GGCC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp143I	GATC	4 cut(s)	13, 64, 520, 636
BspACI	CCGC	1 cut(s)	394
BspANI	GGCC	1 cut(s)	223
BspDI	ATCGAT	1 cut(s)	735
BspFNI	CGCG	1 cut(s)	774
BspLI	GGNNCC	4 cut(s)	15, 286, 817, 834
BspPI	GGATC	5 cut(s)	8, 21, 72, 515, 631
BspT107I	GGYRCC	1 cut(s)	815
BspTI	CTTAAG	1 cut(s)	488
BsrFI	RCCGGY	1 cut(s)	812
BsrI	ACTGG	3 cut(s)	109, 353, 808
BssAI	RCCGGY	1 cut(s)	812
BssECI	CCNNGG	1 cut(s)	791
BssMI	GATC	4 cut(s)	13, 64, 520, 636
BssNAI	GTATAC	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	791
Bst1107I	GTATAC	1 cut(s)	301
Bst4CI	ACNGT	3 cut(s)	80, 298, 701
Bst6I	CTCTTC	2 cut(s)	225, 514
BstAFI	CTTAAG	1 cut(s)	488
BstC8I	GCNNGC	2 cut(s)	396, 772
BstDEI	CTNAG	3 cut(s)	163, 668, 820
BstF5I	GGATG	3 cut(s)	364, 439, 532
BstFNI	CGCG	1 cut(s)	774
BstKTI	GATC	4 cut(s)	16, 67, 523, 639
BstMBI	GATC	4 cut(s)	13, 64, 520, 636
BstMWI	GCNNNNNNNGC	4 cut(s)	181, 374, 383, 395
BstNSI	RCATGY	1 cut(s)	549
BstSFI	CTRYAG	1 cut(s)	873
BstSLI	GKGCMC	1 cut(s)	699
BstUI	CGCG	1 cut(s)	774
BstV1I	GCAGC	2 cut(s)	361, 373
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BstZ17I	GTATAC	1 cut(s)	301
Bsu15I	ATCGAT	1 cut(s)	735
Bsu36I	CCTNAGG	1 cut(s)	820
BsuI	GTATCC	1 cut(s)	818
BsuRI	GGCC	1 cut(s)	223
BsuTUI	ATCGAT	1 cut(s)	735
BtgZI	GCGATG	1 cut(s)	531
BtsCI	GGATG	3 cut(s)	364, 439, 532
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	2 cut(s)	396, 772
CaiI	CAGNNNCTG	1 cut(s)	377
Cfr10I	RCCGGY	1 cut(s)	812
Cfr13I	GGNCC	4 cut(s)	201, 285, 436, 652
ClaI	ATCGAT	1 cut(s)	735
Csp6I	GTAC	2 cut(s)	102, 294
CviAII	CATG	3 cut(s)	546, 799, 829
CviQI	GTAC	2 cut(s)	102, 294
DdeI	CTNAG	3 cut(s)	163, 668, 820
DpnI	GATC	4 cut(s)	15, 66, 522, 638
DpnII	GATC	4 cut(s)	13, 64, 520, 636
Eam1104I	CTCTTC	2 cut(s)	225, 514
EarI	CTCTTC	2 cut(s)	225, 514
Eco130I	CCWWGG	1 cut(s)	791
Eco147I	AGGCCT	1 cut(s)	223
Eco32I	GATATC	1 cut(s)	733
Eco47I	GGWCC	4 cut(s)	201, 285, 436, 652
Eco81I	CCTNAGG	1 cut(s)	820
EcoO109I	RGGNCCY	1 cut(s)	285
EcoRV	GATATC	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	791
ErhI	CCWWGG	1 cut(s)	791
FaeI	CATG	3 cut(s)	549, 802, 832
FaqI	GGGAC	3 cut(s)	298, 592, 809
FatI	CATG	3 cut(s)	545, 798, 828
FauI	CCCGC	1 cut(s)	387
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	375, 387
FokI	GGATG	3 cut(s)	371, 426, 519
Fsp4HI	GCNGC	2 cut(s)	375, 387
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	2 cut(s)	375, 387
GsuI	CTGGAG	1 cut(s)	819
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	1 cut(s)	813
Hin1II	CATG	3 cut(s)	549, 802, 832
HinfI	GANTC	1 cut(s)	493
HpaII	CCGG	1 cut(s)	813
HphI	GGTGA	3 cut(s)	59, 92, 818
Hpy166II	GTNNAC	2 cut(s)	301, 697
Hpy188I	TCNGA	2 cut(s)	7, 137
Hpy188III	TCNNGA	2 cut(s)	660, 836
Hpy8I	GTNNAC	2 cut(s)	301, 697
HpyAV	CCTTC	3 cut(s)	507, 622, 896
HpyCH4III	ACNGT	3 cut(s)	80, 298, 701
HpyCH4V	TGCA	3 cut(s)	332, 679, 697
HpyF10VI	GCNNNNNNNGC	4 cut(s)	181, 374, 383, 395
HpyF3I	CTNAG	3 cut(s)	163, 668, 820
Hsp92II	CATG	3 cut(s)	549, 802, 832
Kzo9I	GATC	4 cut(s)	13, 64, 520, 636
LmnI	GCTCC	2 cut(s)	464, 838
Lsp1109I	GCAGC	2 cut(s)	361, 373
LweI	GCATC	1 cut(s)	407
MaeI	CTAG	1 cut(s)	540
MaeIII	GTNAC	3 cut(s)	26, 116, 448
MalI	GATC	4 cut(s)	15, 66, 522, 638
MboI	GATC	4 cut(s)	13, 64, 520, 636
MboII	GAAGA	4 cut(s)	70, 242, 501, 918
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	699
MluCI	AATT	9 cut(s)	85, 147, 207, 254, 526, 690, 954, 976, 984
MmeI	TCCRAC	2 cut(s)	324, 664
MnlI	CCTC	8 cut(s)	31, 34, 205, 349, 656, 665, 832, 950
MseI	TTAA	7 cut(s)	489, 746, 851, 882, 936, 945, 991
MslI	CAYNNNNRTG	2 cut(s)	444, 702
MspA1I	CMGCKG	1 cut(s)	374
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	1 cut(s)	813
Mva1269I	GAATGC	1 cut(s)	679
MvnI	CGCG	1 cut(s)	774
MwoI	GCNNNNNNNGC	4 cut(s)	181, 374, 383, 395
NdeII	GATC	4 cut(s)	13, 64, 520, 636
NlaIII	CATG	3 cut(s)	549, 802, 832
NlaIV	GGNNCC	4 cut(s)	15, 286, 817, 834
NmuCI	GTSAC	1 cut(s)	26
NspI	RCATGY	1 cut(s)	549
PceI	AGGCCT	1 cut(s)	223
PctI	GAATGC	1 cut(s)	679
PfeI	GAWTC	1 cut(s)	493
PkrI	GCNGC	2 cut(s)	376, 388
PpuMI	RGGWCCY	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	285
PspN4I	GGNNCC	4 cut(s)	15, 286, 817, 834
PspPI	GGNCC	4 cut(s)	201, 285, 436, 652
PspPPI	RGGWCCY	1 cut(s)	285
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	2 cut(s)	103, 295
RsaNI	GTAC	2 cut(s)	102, 294
RseI	CAYNNNNRTG	2 cut(s)	444, 702
SaqAI	TTAA	7 cut(s)	489, 746, 851, 882, 936, 945, 991
SatI	GCNGC	2 cut(s)	375, 387
Sau3AI	GATC	4 cut(s)	13, 64, 520, 636
Sau96I	GGNCC	4 cut(s)	201, 285, 436, 652
SduI	GDGCHC	1 cut(s)	699
SfaNI	GCATC	1 cut(s)	407
SfcI	CTRYAG	1 cut(s)	873
SinI	GGWCC	4 cut(s)	201, 285, 436, 652
SmiMI	CAYNNNNRTG	2 cut(s)	444, 702
SmlI	CTYRAG	4 cut(s)	176, 279, 488, 658
SmoI	CTYRAG	4 cut(s)	176, 279, 488, 658
Sse9I	AATT	9 cut(s)	85, 147, 207, 254, 526, 690, 954, 976, 984
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	1 cut(s)	394
SspI	AATATT	3 cut(s)	34, 593, 888
SspMI	CTAG	1 cut(s)	540
StuI	AGGCCT	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	791
TaaI	ACNGT	3 cut(s)	80, 298, 701
TaqI	TCGA	1 cut(s)	735
TasI	AATT	9 cut(s)	85, 147, 207, 254, 526, 690, 954, 976, 984
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	7 cut(s)	489, 746, 851, 882, 936, 945, 991
Tru9I	TTAA	7 cut(s)	489, 746, 851, 882, 936, 945, 991
TscAI	CASTG	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	2 cut(s)	374, 386
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	4 cut(s)	333, 448, 835, 948
TspRI	CASTG	1 cut(s)	339
Vha464I	CTTAAG	1 cut(s)	488
VneI	GTGCAC	1 cut(s)	695
VpaK11BI	GGWCC	4 cut(s)	201, 285, 436, 652
XapI	RAATTY	2 cut(s)	85, 526
XceI	RCATGY	1 cut(s)	549
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.