Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0025949

Physical Location & Seq

Genomic Coordinates Reverse (-)

24818485 .. 24822749

Gene Structure 4265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG126800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCTCGCGGGTTCTATGCAAACGATTATTTGTATTGTTCAGTTGCTGCTTTTCTTGGTCTGTATTGAGATTGGTCATTGTCTAGGGGAGGTAGGGAGAATGTATGAATCCAATGTGGATGATGTAGGATATAGGCTTGTAGCCATTTACACTCCTGTAAGAGAGGATGGAGTGGAGGGGTCACCTGTTTCAGCATCGACAGAGCCGATTGCAGTCGAGCCTGATGTTCTTAAGGAAGTGAAGCAGAAGCTTGATCTCGGATCAGTGAAATTTGAGGCATTGTGTGACAAGGATCAATCTACAAAAAAGACTACTGCAGTAGGAACTCCTGAGAGAAGAACCCTTGAAGTCAATAGAAAAAGAGTGAAGGTTATAAAGCCTGGTTCCAAGACTTCTTTCCCGACTACTGAAATTCGTGGAAGCTATGCACCTCCGTGTCATGTAAGATTGGTGTTACTATACAATTATACAGGCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

159

Amino Acids

17.47

Weight (kDa)

7.6

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IG_AIR9	PF23197	33 - 66	1.4e-08	AIR9 A9 domain
PH_AIR9	PF23218	96 - 150	2.6e-21	AIR9 PH-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025949)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug05G0107000
rosa_samantha	Rh4CG126800 Rh4CG127300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AccII	CGCG	1 cut(s)	8
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	2 cut(s)	268, 300
AcsI	RAATTY	2 cut(s)	269, 411
AflII	CTTAAG	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	379
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AleI	CACNNNNGTG	1 cut(s)	433
AluBI	AGCT	2 cut(s)	250, 423
AluI	AGCT	2 cut(s)	250, 423
AlwI	GGATC	2 cut(s)	268, 300
AlwNI	CAGNNNCTG	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	2 cut(s)	269, 411
AsuHPI	GGTGA	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	381
BfaI	CTAG	2 cut(s)	83, 478
BfmI	CTRYAG	1 cut(s)	315
BfrI	CTTAAG	1 cut(s)	230
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	381
BmiI	GGNNCC	2 cut(s)	385, 475
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	381
BseGI	GGATG	2 cut(s)	124, 172
BseMII	CTCAG	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	253, 260, 292
BspACI	CCGC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	385, 475
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	2 cut(s)	268, 300
BspTI	CTTAAG	1 cut(s)	230
BssMI	GATC	3 cut(s)	253, 260, 292
Bst2UI	CCWGG	1 cut(s)	381
BstAFI	CTTAAG	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	330
BstEII	GGTNACC	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	124, 172
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	3 cut(s)	256, 263, 295
BstMBI	GATC	3 cut(s)	253, 260, 292
BstNI	CCWGG	1 cut(s)	381
BstPI	GGTNACC	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	379
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	124, 172
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	46
CviAII	CATG	1 cut(s)	440
CviJI	RGCY	8 cut(s)	136, 143, 205, 220, 250, 379, 423, 474
CviKI_1	RGCY	8 cut(s)	136, 143, 205, 220, 250, 379, 423, 474
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	3 cut(s)	255, 262, 294
DpnII	GATC	3 cut(s)	253, 260, 292
Eco91I	GGTNACC	1 cut(s)	180
EcoO65I	GGTNACC	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	379
FaeI	CATG	1 cut(s)	443
FaiI	YATR	8 cut(s)	17, 105, 132, 374, 426, 441, 460, 468
FatI	CATG	1 cut(s)	439
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	2 cut(s)	131, 179
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	2 cut(s)	83, 478
GluI	GCNGC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	443
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	1 cut(s)	107
HphI	GGTGA	1 cut(s)	174
Hpy188I	TCNGA	1 cut(s)	260
Hpy188III	TCNNGA	2 cut(s)	329, 400
HpyAV	CCTTC	1 cut(s)	361
HpyCH4V	TGCA	4 cut(s)	19, 212, 317, 428
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	1 cut(s)	443
Kzo9I	GATC	3 cut(s)	253, 260, 292
LmnI	GCTCC	1 cut(s)	479
LpnPI	CCDG	7 cut(s)	168, 198, 234, 342, 366, 393, 456
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	1 cut(s)	203
MaeI	CTAG	2 cut(s)	83, 478
MaeIII	GTNAC	3 cut(s)	180, 284, 453
MalI	GATC	3 cut(s)	255, 262, 294
MboI	GATC	3 cut(s)	253, 260, 292
MboII	GAAGA	1 cut(s)	348
MluCI	AATT	3 cut(s)	269, 411, 463
MnlI	CCTC	5 cut(s)	82, 157, 169, 268, 441
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	433
MspCI	CTTAAG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	1 cut(s)	8
NdeII	GATC	3 cut(s)	253, 260, 292
NlaIII	CATG	1 cut(s)	443
NlaIV	GGNNCC	2 cut(s)	385, 475
NmuCI	GTSAC	2 cut(s)	180, 284
OliI	CACNNNNGTG	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	48
PsiI	TTATAA	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	379
PspEI	GGTNACC	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	385, 475
PstI	CTGCAG	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	3 cut(s)	253, 260, 292
ScrFI	CCNGG	1 cut(s)	381
SetI	ASST	6 cut(s)	93, 187, 252, 372, 425, 433
SfaNI	GCATC	1 cut(s)	203
SfcI	CTRYAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	3 cut(s)	269, 411, 463
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	2 cut(s)	83, 478
StyD4I	CCNGG	1 cut(s)	379
TaqI	TCGA	2 cut(s)	197, 216
TasI	AATT	3 cut(s)	269, 411, 463
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	2 cut(s)	180, 284
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	2 cut(s)	180, 284
TspDTI	ATGAA	1 cut(s)	120
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	1 cut(s)	270
Vha464I	CTTAAG	1 cut(s)	230
XapI	RAATTY	2 cut(s)	269, 411
XspI	CTAG	2 cut(s)	83, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.