Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0030036

Physical Location & Seq

Genomic Coordinates Reverse (-)

38488012 .. 38488314

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG176900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTTAATGTCTACTGGTCCAATCAGCGCTGTTGGAAATGGACTCTGTATGTCCCTAATGACCATACTCATGGGAGATATGATTAATTCGTTTGGAGAAACTAGGAATAATAAAGTAGTGGCTAATGCAGTTTCCAAGGTAATGAGGCCTAGTGTGACTAAAGCATTTATAGTCATCATTGTTAGCAATATTTGCATTTCTCTGCTTTCACCAGAATTTGTATCAACAAGTTTACTTTCAATGAAAAGGAAAAGAAGAAAAACAAATGCTGTTTTGGTTCTCTTATTCTTGAAAATAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

100

Amino Acids

10.82

Weight (kDa)

10.69

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030036)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410961
rosa_samantha	Rh4CG176900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	215
AfeI	AGCGCT	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	240, 292
Aor51HI	AGCGCT	1 cut(s)	28
AoxI	GGCC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	215
AseI	ATTAAT	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	17
BfaI	CTAG	2 cut(s)	102, 150
BfoI	RGCGCY	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	148
BspANI	GGCC	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	135
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstMWI	GCNNNNNNNGC	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	148
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	17
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	2 cut(s)	122, 148
CviKI_1	RGCY	2 cut(s)	122, 148
Eco130I	CCWWGG	1 cut(s)	135
Eco147I	AGGCCT	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	17
Eco47III	AGCGCT	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	1 cut(s)	73
FaiI	YATR	5 cut(s)	50, 65, 71, 80, 170
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	11
FspBI	CTAG	2 cut(s)	102, 150
GlaI	GCGC	1 cut(s)	28
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	148
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	1 cut(s)	42
HphI	GGTGA	1 cut(s)	201
Hpy166II	GTNNAC	2 cut(s)	12, 233
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	2 cut(s)	12, 233
HpyCH4V	TGCA	2 cut(s)	128, 195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	1 cut(s)	27
LpnPI	CCDG	1 cut(s)	225
MaeI	CTAG	2 cut(s)	102, 150
MaeIII	GTNAC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	267
MluCI	AATT	2 cut(s)	85, 215
MlyI	GAGTC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	1 cut(s)	138
MseI	TTAA	2 cut(s)	5, 84
MslI	CAYNNNNRTG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	192
NlaIII	CATG	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	154
PceI	AGGCCT	1 cut(s)	148
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
PshBI	ATTAAT	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	5, 84
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	1 cut(s)	36
SetI	ASST	1 cut(s)	141
SgeI	CNNG	7 cut(s)	27, 82, 114, 148, 162, 224, 240
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	85, 215
SseBI	AGGCCT	1 cut(s)	148
SspI	AATATT	1 cut(s)	190
SspMI	CTAG	2 cut(s)	102, 150
StuI	AGGCCT	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	135
TasI	AATT	2 cut(s)	85, 215
Tru1I	TTAA	2 cut(s)	5, 84
Tru9I	TTAA	2 cut(s)	5, 84
TseFI	GTSAC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	17
VspI	ATTAAT	1 cut(s)	84
XapI	RAATTY	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	2 cut(s)	102, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.