Rh4CG369400

nuclear matrix constituent protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0022727
Physical Location & Seq
Forward (+)
62385890 .. 62387488
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG369400.1

Sequence Viewer

Length: 873 bp
ATGATTCTTAAGCAAAAAGAGAAAGACCTTTATGAGGCTGAAAGGAAGATTGAGTCTTCAAACTCTCTGTTGAAAGAGAAGGAAGATGATGTGAATAAATGCCTGGCTGACCTAGTCTCAAAGGAAAAGGAGGTTCATTCAGCTTCATACATCTTAGAGATGAAGGAGAAAGAATTACATGCATTGGAGGAAAAACTAAATTCAAGAGAAAATGTGGAGATTCAAGAGCATCTTGGCCAGCACAGGGCCATTCTTGATAGAAAAATGCAGGCTTTTGAGTTGGGAATTGAGGAAAGGAGGAAATCTTTTGAGAAGGAACAGAGTAGCAAGATAGAAGCGGTGGAACAAAAGGAACTTGAAATCAGTCATAAGGAAGAAATGTTGAAGAAGCAAGAGAAAGCGTTGGATGAGAAATCAGAGAGGCTGAAGGAGAAAAATAAGGAAGTTGAAACAAATTTGAAAAATTTGAAGGAGAAAGAGAAGACCTTCAAAGCTGATGAGAAAAAGTTAGAGCTGGAAAGGCAGCAAATACTTACTGATATAGAGCACCTTCAGAATCTTAAAGATGAAATTCAGGAAATAAAAGACGAAAATGCTCAACTGGAGCAGCAAATTCGTGAAGGGAGAGAGAAGCAGGGAATTACCGAGAAAGAGAGGTCGGACCACCTACGTTTGCAGTCAGAACTGCAGCCGGAAATAAACAATTATATACTTCAGAATGAGTTACTTTTGAAGGAAGCTGAAGATCTGAAGCAGGAGAGGGAAAAGTTCGAAAAAGACTGGGAAGATTTGGATGAGAGAAGAGCTAAAGTTGATGCAGAGCTTAGAAAAGTTGTTGAAGAGAGAAAAATTGGAAAGATTACAATGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

34.77

Weight (kDa)

5.25

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022727)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0436071
rosa_multiflora Rmu_sc0023239.1_g000001
rosa_samantha Rh4BG354900 Rh4CG369400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 338
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 5 cut(s) 199, 454, 463, 570, 612
AcuI CTGAAG 5 cut(s) 446, 536, 698, 762, 770
AfiI CCNNNNNNNGG 2 cut(s) 34, 244
AflII CTTAAG 1 cut(s) 8
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 6 cut(s) 143, 494, 514, 740, 806, 823
AluI AGCT 6 cut(s) 143, 494, 514, 740, 806, 823
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 1 cut(s) 121
AoxI GGCC 2 cut(s) 235, 246
ApeKI GCWGC 3 cut(s) 523, 607, 688
ApoI RAATTY 5 cut(s) 199, 454, 463, 570, 612
Asp700I GAANNNNTTC 1 cut(s) 485
AspS9I GGNCC 2 cut(s) 246, 661
AsuII TTCGAA 1 cut(s) 771
AvaII GGWCC 1 cut(s) 661
BalI TGGCCA 1 cut(s) 237
BbsI GAAGAC 2 cut(s) 48, 488
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 3 cut(s) 535, 619, 700
BcgI CGANNNNNNTGC 2 cut(s) 596, 630
BciT130I CCWGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 686
BfrI CTTAAG 1 cut(s) 8
BglII AGATCT 1 cut(s) 745
BisI GCNGC 3 cut(s) 524, 608, 689
BlsI GCNGC 3 cut(s) 525, 609, 690
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 661
BmgT120I GGNCC 2 cut(s) 246, 661
BmrFI CCNGG 1 cut(s) 104
BmrI ACTGGG 1 cut(s) 790
BmsI GCATC 2 cut(s) 238, 805
BmuI ACTGGG 1 cut(s) 790
BpiI GAAGAC 2 cut(s) 48, 488
BpmI CTGGAG 1 cut(s) 623
Bpu14I TTCGAA 1 cut(s) 771
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 244
Bse1I ACTGG 2 cut(s) 606, 785
BseBI CCWGG 1 cut(s) 104
BseGI GGATG 2 cut(s) 412, 799
BseLI CCNNNNNNNGG 2 cut(s) 34, 244
BseNI ACTGG 2 cut(s) 606, 785
BseXI GCAGC 3 cut(s) 535, 619, 700
BshFI GGCC 2 cut(s) 237, 248
BsiHKAI GWGCWC 1 cut(s) 549
BsiSI CCGG 1 cut(s) 692
BslI CCNNNNNNNGG 2 cut(s) 34, 244
BsmAI GTCTC 1 cut(s) 121
BsnI GGCC 2 cut(s) 237, 248
Bsp119I TTCGAA 1 cut(s) 771
Bsp1286I GDGCHC 1 cut(s) 549
Bsp143I GATC 1 cut(s) 745
BspACI CCGC 1 cut(s) 338
BspANI GGCC 2 cut(s) 237, 248
BspMAI CTGCAG 1 cut(s) 690
BspQI GCTCTTC 1 cut(s) 796
BspT104I TTCGAA 1 cut(s) 771
BspTI CTTAAG 1 cut(s) 8
BsrI ACTGG 2 cut(s) 606, 785
BssMI GATC 1 cut(s) 745
Bst2UI CCWGG 1 cut(s) 104
Bst6I CTCTTC 2 cut(s) 796, 834
BstAFI CTTAAG 1 cut(s) 8
BstBI TTCGAA 1 cut(s) 771
BstC8I GCNNGC 2 cut(s) 239, 270
BstDEI CTNAG 2 cut(s) 154, 824
BstENI CCTNNNNNAGG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 412, 799
BstKTI GATC 1 cut(s) 748
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 1 cut(s) 745
BstMWI GCNNNNNNNGC 1 cut(s) 520
BstNI CCWGG 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 686
BstV1I GCAGC 3 cut(s) 535, 619, 700
BstV2I GAAGAC 2 cut(s) 48, 488
BstX2I RGATCY 1 cut(s) 745
BstYI RGATCY 1 cut(s) 745
BsuRI GGCC 2 cut(s) 237, 248
BtsCI GGATG 2 cut(s) 412, 799
Cac8I GCNNGC 2 cut(s) 239, 270
Cfr13I GGNCC 2 cut(s) 246, 661
CviAII CATG 1 cut(s) 179
DdeI CTNAG 2 cut(s) 154, 824
DpnI GATC 1 cut(s) 747
DpnII GATC 1 cut(s) 745
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 2 cut(s) 796, 834
EarI CTCTTC 2 cut(s) 796, 834
Eco47I GGWCC 1 cut(s) 661
Eco57I CTGAAG 5 cut(s) 446, 536, 698, 762, 770
EcoNI CCTNNNNNAGG 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 184
FaeI CATG 1 cut(s) 182
FaiI YATR 7 cut(s) 33, 148, 180, 369, 542, 708, 710
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FatI CATG 1 cut(s) 178
Fnu4HI GCNGC 3 cut(s) 524, 608, 689
FokI GGATG 2 cut(s) 419, 806
Fsp4HI GCNGC 3 cut(s) 524, 608, 689
FspBI CTAG 1 cut(s) 113
GluI GCNGC 3 cut(s) 524, 608, 689
GsuI CTGGAG 1 cut(s) 623
HaeIII GGCC 2 cut(s) 237, 248
HapII CCGG 1 cut(s) 692
Hin1II CATG 1 cut(s) 182
HinfI GANTC 4 cut(s) 4, 53, 220, 556
HpaII CCGG 1 cut(s) 692
Hpy188I TCNGA 6 cut(s) 418, 555, 661, 682, 717, 750
Hpy188III TCNNGA 5 cut(s) 204, 224, 254, 575, 617
HpyAV CCTTC 9 cut(s) 73, 157, 307, 421, 463, 496, 560, 614, 727
HpyCH4IV ACGT 1 cut(s) 670
HpyCH4V TGCA 5 cut(s) 182, 268, 676, 688, 818
HpyF10VI GCNNNNNNNGC 1 cut(s) 520
HpyF3I CTNAG 2 cut(s) 154, 824
HpySE526I ACGT 1 cut(s) 670
Hsp92II CATG 1 cut(s) 182
Kzo9I GATC 1 cut(s) 745
LguI GCTCTTC 1 cut(s) 796
LmnI GCTCC 1 cut(s) 604
Lsp1109I GCAGC 3 cut(s) 535, 619, 700
LweI GCATC 2 cut(s) 238, 805
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 670
MaeIII GTNAC 1 cut(s) 723
MalI GATC 1 cut(s) 747
MboI GATC 1 cut(s) 745
MflI RGATCY 1 cut(s) 745
MhlI GDGCHC 1 cut(s) 549
MlsI TGGCCA 1 cut(s) 237
MluNI TGGCCA 1 cut(s) 237
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 2 cut(s) 384, 639
MnlI CCTC 8 cut(s) 28, 124, 181, 283, 291, 414, 648, 753
Mox20I TGGCCA 1 cut(s) 237
Mph1103I ATGCAT 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 485
MscI TGGCCA 1 cut(s) 237
MseI TTAA 2 cut(s) 9, 561
Msp20I TGGCCA 1 cut(s) 237
MspCI CTTAAG 1 cut(s) 8
MspI CCGG 1 cut(s) 692
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 520
NdeII GATC 1 cut(s) 745
NlaIII CATG 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 184
NspI RCATGY 1 cut(s) 182
NspV TTCGAA 1 cut(s) 771
PciSI GCTCTTC 1 cut(s) 796
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 3 cut(s) 4, 220, 556
PflFI GACNNNGTC 1 cut(s) 113
PkrI GCNGC 3 cut(s) 525, 609, 690
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspPI GGNCC 2 cut(s) 246, 661
PstI CTGCAG 1 cut(s) 690
PsuI RGATCY 1 cut(s) 745
PsyI GACNNNGTC 1 cut(s) 113
SapI GCTCTTC 1 cut(s) 796
SaqAI TTAA 2 cut(s) 9, 561
SatI GCNGC 3 cut(s) 524, 608, 689
Sau3AI GATC 1 cut(s) 745
Sau96I GGNCC 2 cut(s) 246, 661
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 549
SfaNI GCATC 2 cut(s) 238, 805
SfcI CTRYAG 1 cut(s) 686
SfuI TTCGAA 1 cut(s) 771
SinI GGWCC 1 cut(s) 661
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SsiI CCGC 1 cut(s) 338
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 102
TaiI ACGT 1 cut(s) 673
TaqI TCGA 1 cut(s) 771
TfiI GAWTC 3 cut(s) 4, 220, 556
Tru1I TTAA 2 cut(s) 9, 561
Tru9I TTAA 2 cut(s) 9, 561
TseI GCWGC 3 cut(s) 523, 607, 688
TspDTI ATGAA 4 cut(s) 125, 135, 176, 582
Tth111I GACNNNGTC 1 cut(s) 113
Vha464I CTTAAG 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 661
XagI CCTNNNNNAGG 1 cut(s) 32
XapI RAATTY 5 cut(s) 199, 454, 463, 570, 612
XceI RCATGY 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 485
XspI CTAG 1 cut(s) 113
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.