Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0034245

Physical Location & Seq

Genomic Coordinates Reverse (-)

68884398 .. 68885006

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG456700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTGGTTTGGCCATTTTAATCATCTCTTCTACCTAGACTTATCGAATAATTCATTCACTGGGAAAGTCCCTAGAAGCATAACTGGACTGCCGAGGCTCATTACTGGGAACATCACATTTAAGGAACCATCCCCTGACATCGCCCTTTTCATGAAGAGGAGTGTAAGTACAAGGGGATTGCAGTATAATAATGTTTGGAGCTTCCCACCTACATTGGTATTTAGCAACAATAATCTTAGTGGACCAATCTGGCCAGTGTTTGGGAACCTGAAATTGCTCCATGTTTTGGATCTGGGATTCAACAGTCTATCAGGACCAATCCCGAGTAGTTTTTCTTGGATGACCAACTTGGAGACTATGGATTTGTCTCATAACAAGCTTTCAGGGGCAATACCGCCTTCGTTGATTCGTCTCAGCTTTTTGTCCAAATTTAGTGTTGCATACAATCAATTAGAGGGGGAGATCCCTACAGGAGGTCAGTTTATGACCTTCCCAAATTCAAGCTTTGAAGGGAATAGTAATCTTTGTGGCTTCCATGCTCCCTCTTGTCCATCAAATTCGACCCCAGAAGTGGAAAGTGCACCACCGCCACCCAGGAAGCAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0002376 GO:0003674 GO:0003824 GO:0004383 GO:0004672 GO:0004674 GO:0006139 GO:0006163 GO:0006164 GO:0006182 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009187 GO:0009190 GO:0009259 GO:0009260 GO:0009975 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016829 GO:0016849 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0031347 GO:0034641 GO:0034654 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0045087 GO:0046068 GO:0046390 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052652 GO:0055086 GO:0060089 GO:0065007 GO:0071704 GO:0072521 GO:0072522 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

202

Amino Acids

22.32

Weight (kDa)

7.84

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	72 - 127	2.7e-06	Leucine rich repeat
LRR_8	PF13855	93 - 151	7e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0034245)

Species	Orthologous Gene IDs
rosa_samantha	Rh4BG439400 Rh4CG456700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	260, 286
AciI	CCGC	2 cut(s)	395, 587
AclWI	GGATC	2 cut(s)	297, 457
AcoI	YGGCCR	2 cut(s)	10, 251
AcsI	RAATTY	3 cut(s)	428, 496, 556
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	4 cut(s)	260, 286, 473, 571
AgsI	TTSAA	3 cut(s)	301, 501, 509
AjnI	CCWGG	1 cut(s)	593
AluBI	AGCT	4 cut(s)	201, 379, 417, 504
AluI	AGCT	4 cut(s)	201, 379, 417, 504
Alw21I	GWGCWC	1 cut(s)	583
Alw26I	GTCTC	3 cut(s)	347, 372, 416
Alw44I	GTGCAC	1 cut(s)	579
AlwI	GGATC	2 cut(s)	297, 457
Ama87I	CYCGRG	1 cut(s)	322
AoxI	GGCC	2 cut(s)	10, 251
ApaLI	GTGCAC	1 cut(s)	579
ApoI	RAATTY	3 cut(s)	428, 496, 556
ArsI	GACNNNNNNTTYG	2 cut(s)	346, 378
AspS9I	GGNCC	2 cut(s)	242, 314
AvaI	CYCGRG	1 cut(s)	322
AvaII	GGWCC	2 cut(s)	242, 314
BaeGI	GKGCMC	1 cut(s)	583
BalI	TGGCCA	2 cut(s)	12, 253
Bbv12I	GWGCWC	1 cut(s)	583
BccI	CCATC	2 cut(s)	136, 559
BciT130I	CCWGG	1 cut(s)	595
BcoDI	GTCTC	3 cut(s)	347, 372, 416
BfaI	CTAG	2 cut(s)	35, 72
BfmI	CTRYAG	1 cut(s)	468
Bme1390I	CCNGG	1 cut(s)	595
Bme18I	GGWCC	2 cut(s)	242, 314
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	242, 314
BmiI	GGNNCC	2 cut(s)	126, 266
BmrFI	CCNGG	1 cut(s)	595
BmrI	ACTGGG	2 cut(s)	69, 114
BmuI	ACTGGG	2 cut(s)	69, 114
BsaJI	CCNNGG	2 cut(s)	92, 593
BsaXI	ACNNNNNCTCC	2 cut(s)	151, 181
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 286, 473, 571
Bse1I	ACTGG	4 cut(s)	64, 88, 109, 254
BseBI	CCWGG	1 cut(s)	595
BseDI	CCNNGG	2 cut(s)	92, 593
BseGI	GGATG	2 cut(s)	128, 345
BseLI	CCNNNNNNNGG	4 cut(s)	260, 286, 473, 571
BseMII	CTCAG	1 cut(s)	427
BseNI	ACTGG	4 cut(s)	64, 88, 109, 254
BseRI	GAGGAG	1 cut(s)	172
BseSI	GKGCMC	1 cut(s)	583
BshFI	GGCC	2 cut(s)	12, 253
BsiHKAI	GWGCWC	1 cut(s)	583
BsiHKCI	CYCGRG	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	4 cut(s)	260, 286, 473, 571
BsmAI	GTCTC	3 cut(s)	347, 372, 416
BsmBI	CGTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	12, 253
BsoBI	CYCGRG	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	2 cut(s)	289, 462
BspACI	CCGC	2 cut(s)	395, 587
BspANI	GGCC	2 cut(s)	12, 253
BspCNI	CTCAG	1 cut(s)	426
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	126, 266
BspPI	GGATC	2 cut(s)	297, 457
BsrI	ACTGG	4 cut(s)	64, 88, 109, 254
BssECI	CCNNGG	2 cut(s)	92, 593
BssMI	GATC	2 cut(s)	289, 462
Bst2UI	CCWGG	1 cut(s)	595
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	2 cut(s)	32, 149
BstDEI	CTNAG	2 cut(s)	236, 413
BstENI	CCTNNNNNAGG	1 cut(s)	471
BstF5I	GGATG	2 cut(s)	128, 345
BstKTI	GATC	2 cut(s)	292, 465
BstMAI	GTCTC	3 cut(s)	347, 372, 416
BstMBI	GATC	2 cut(s)	289, 462
BstNI	CCWGG	1 cut(s)	595
BstSCI	CCNGG	1 cut(s)	593
BstSFI	CTRYAG	1 cut(s)	468
BstSLI	GKGCMC	1 cut(s)	583
BstX2I	RGATCY	2 cut(s)	289, 462
BstYI	RGATCY	2 cut(s)	289, 462
BsuRI	GGCC	2 cut(s)	12, 253
BtgZI	GCGATG	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	128, 345
BtsIMutI	CAGTG	2 cut(s)	57, 261
CciI	TCATGA	1 cut(s)	150
Cfr13I	GGNCC	2 cut(s)	242, 314
Csp6I	GTAC	1 cut(s)	168
CspCI	CAANNNNNGTGG	2 cut(s)	195, 230
CviAII	CATG	3 cut(s)	151, 281, 536
CviJI	RGCY	8 cut(s)	12, 97, 201, 253, 379, 417, 504, 531
CviKI_1	RGCY	8 cut(s)	12, 97, 201, 253, 379, 417, 504, 531
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	2 cut(s)	236, 413
DpnI	GATC	2 cut(s)	291, 464
DpnII	GATC	2 cut(s)	289, 462
EaeI	YGGCCR	2 cut(s)	10, 251
Eam1104I	CTCTTC	2 cut(s)	32, 149
EarI	CTCTTC	2 cut(s)	32, 149
Eco47I	GGWCC	2 cut(s)	242, 314
Eco88I	CYCGRG	1 cut(s)	322
EcoNI	CCTNNNNNAGG	1 cut(s)	471
EcoRII	CCWGG	1 cut(s)	593
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	3 cut(s)	154, 284, 539
FaiI	YATR	9 cut(s)	80, 152, 186, 282, 359, 372, 442, 485, 537
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	3 cut(s)	150, 280, 535
FokI	GGATG	2 cut(s)	115, 352
FspBI	CTAG	2 cut(s)	35, 72
HaeIII	GGCC	2 cut(s)	12, 253
Hin1II	CATG	3 cut(s)	154, 284, 539
HindIII	AAGCTT	2 cut(s)	377, 502
HinfI	GANTC	2 cut(s)	297, 406
Hpy166II	GTNNAC	2 cut(s)	242, 581
Hpy188III	TCNNGA	3 cut(s)	151, 312, 322
Hpy8I	GTNNAC	2 cut(s)	242, 581
HpyAV	CCTTC	3 cut(s)	408, 499, 503
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	3 cut(s)	181, 440, 581
HpyF3I	CTNAG	2 cut(s)	236, 413
Hsp92II	CATG	3 cut(s)	154, 284, 539
Kzo9I	GATC	2 cut(s)	289, 462
LmnI	GCTCC	3 cut(s)	198, 282, 544
MaeI	CTAG	2 cut(s)	35, 72
MalI	GATC	2 cut(s)	291, 464
MboI	GATC	2 cut(s)	289, 462
MboII	GAAGA	2 cut(s)	19, 166
MflI	RGATCY	2 cut(s)	289, 462
MhlI	GDGCHC	1 cut(s)	583
MlsI	TGGCCA	2 cut(s)	12, 253
MluCI	AATT	6 cut(s)	49, 272, 428, 449, 496, 556
MluNI	TGGCCA	2 cut(s)	12, 253
MnlI	CCTC	5 cut(s)	87, 150, 448, 467, 553
Mox20I	TGGCCA	2 cut(s)	12, 253
MscI	TGGCCA	2 cut(s)	12, 253
MseI	TTAA	2 cut(s)	18, 120
Msp20I	TGGCCA	2 cut(s)	12, 253
MspR9I	CCNGG	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	595
NdeII	GATC	2 cut(s)	289, 462
NlaIII	CATG	3 cut(s)	154, 284, 539
NlaIV	GGNNCC	2 cut(s)	126, 266
NmeAIII	GCCGAG	1 cut(s)	117
PagI	TCATGA	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	297, 406
PflMI	CCANNNNNTGG	2 cut(s)	260, 286
Psp6I	CCWGG	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	593
PspN4I	GGNNCC	2 cut(s)	126, 266
PspPI	GGNCC	2 cut(s)	242, 314
PsuI	RGATCY	2 cut(s)	289, 462
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	18, 120
Sau3AI	GATC	2 cut(s)	289, 462
Sau96I	GGNCC	2 cut(s)	242, 314
ScrFI	CCNGG	1 cut(s)	595
SduI	GDGCHC	1 cut(s)	583
SetI	ASST	9 cut(s)	36, 203, 211, 270, 381, 419, 478, 491, 506
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	2 cut(s)	242, 314
Sse9I	AATT	6 cut(s)	49, 272, 428, 449, 496, 556
SsiI	CCGC	2 cut(s)	395, 587
SspMI	CTAG	2 cut(s)	35, 72
StyD4I	CCNGG	1 cut(s)	593
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	2 cut(s)	44, 560
TasI	AATT	6 cut(s)	49, 272, 428, 449, 496, 556
TatI	WGTACW	1 cut(s)	167
TfiI	GAWTC	2 cut(s)	297, 406
Tru1I	TTAA	2 cut(s)	18, 120
Tru9I	TTAA	2 cut(s)	18, 120
TscAI	CASTG	2 cut(s)	64, 261
TspDTI	ATGAA	3 cut(s)	42, 139, 167
TspRI	CASTG	2 cut(s)	64, 261
Van91I	CCANNNNNTGG	2 cut(s)	260, 286
VneI	GTGCAC	1 cut(s)	579
VpaK11BI	GGWCC	2 cut(s)	242, 314
XagI	CCTNNNNNAGG	1 cut(s)	471
XapI	RAATTY	3 cut(s)	428, 496, 556
XspI	CTAG	2 cut(s)	35, 72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.