Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0026622

Physical Location & Seq

Genomic Coordinates Reverse (-)

1131428 .. 1131868

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG006400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAATCAACGGGCACGAGTTTTTCAGAGGAATCTGGGTGCCGGAGATCATATCCGCCAAAGGCCACGACTTCGAAGTCGACTGGTGGTCCCTGGGAGTCTTACTATACGACGTCGTTCAGAGGCTCCAACCGGAAGGAGACGTTTTACCGGATACTGACCCAGGCCCCGGAGCTTACGGGCGAAGCGACGCCGTTAAGGGACCTGATTAAGAACCTGCTGGAGAAGGATCCGAAGCAGAGAATCGGGTTGGATGAAATCAACGGGAGGTGCTTAGACCGGTCGGAGATCTGGAATCGTGTTCTGATCCAATCGGGGTCGAGGCGCAGTGACGATCCGACGGGGTCTAGATGCAGTGAAGGTCCAGCGAGGTCTGGGCGCAGTGAAGGTCCGGCGTCGTCTGGGGGCAGTGAAGGTCCGGCGGTGATGGGCTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

146

Amino Acids

15.98

Weight (kDa)

9.12

Isoelectric Point (pI)

65.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026622)

Species	Orthologous Gene IDs
rosa_samantha	Rh3BG309800 Rh4DG006400 Rh7BG148100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	76
AatII	GACGTC	1 cut(s)	116
Acc36I	ACCTGC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	80
AciI	CCGC	2 cut(s)	56, 422
AclWI	GGATC	4 cut(s)	224, 237, 301, 329
AcyI	GRCGYC	3 cut(s)	113, 191, 395
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgeI	ACCGGT	1 cut(s)	279
AhdI	GACNNNNNGTC	1 cut(s)	87
AjnI	CCWGG	2 cut(s)	92, 162
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	4 cut(s)	224, 237, 301, 329
AoxI	GGCC	2 cut(s)	63, 165
AsiGI	ACCGGT	1 cut(s)	279
AspLEI	GCGC	2 cut(s)	327, 381
AspS9I	GGNCC	6 cut(s)	89, 166, 202, 362, 389, 416
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	436
AsuII	TTCGAA	1 cut(s)	74
AvaII	GGWCC	5 cut(s)	89, 202, 362, 389, 416
BaeGI	GKGCMC	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	39
BauI	CACGAG	1 cut(s)	16
BccI	CCATC	1 cut(s)	421
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	2 cut(s)	94, 164
BciVI	GTATCC	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	348
BfuAI	ACCTGC	1 cut(s)	225
BfuI	GTATCC	1 cut(s)	147
BglII	AGATCT	1 cut(s)	288
Bme1390I	CCNGG	3 cut(s)	94, 164, 170
Bme18I	GGWCC	5 cut(s)	89, 202, 362, 389, 416
BmeRI	GACNNNNNGTC	1 cut(s)	87
BmgT120I	GGNCC	6 cut(s)	89, 166, 202, 362, 389, 416
BmiI	GGNNCC	6 cut(s)	41, 91, 127, 168, 203, 231
BmrFI	CCNGG	3 cut(s)	94, 164, 170
BmsI	GCATC	1 cut(s)	341
BpmI	CTGGAG	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	170
BsaHI	GRCGYC	3 cut(s)	113, 191, 395
BsaJI	CCNNGG	4 cut(s)	92, 93, 162, 168
BsaWI	WCCGGW	3 cut(s)	132, 150, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse118I	RCCGGY	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	88
BseBI	CCWGG	2 cut(s)	94, 164
BseDI	CCNNGG	4 cut(s)	92, 93, 162, 168
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	88
BseSI	GKGCMC	1 cut(s)	17
Bsh1285I	CGRYCG	1 cut(s)	284
BshFI	GGCC	2 cut(s)	65, 167
BshNI	GGYRCC	1 cut(s)	39
BshTI	ACCGGT	1 cut(s)	279
BsiEI	CGRYCG	1 cut(s)	284
BsiSI	CCGG	7 cut(s)	43, 133, 151, 170, 280, 392, 419
BslFI	GGGAC	2 cut(s)	75, 215
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	134
BsmBI	CGTCTC	1 cut(s)	134
BsmFI	GGGAC	2 cut(s)	75, 215
BsnI	GGCC	2 cut(s)	65, 167
Bsp119I	TTCGAA	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	5 cut(s)	47, 229, 288, 306, 334
BspACI	CCGC	2 cut(s)	56, 422
BspANI	GGCC	2 cut(s)	65, 167
BspLI	GGNNCC	6 cut(s)	41, 91, 127, 168, 203, 231
BspMI	ACCTGC	1 cut(s)	225
BspPI	GGATC	4 cut(s)	224, 237, 301, 329
BspT104I	TTCGAA	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	279
BssECI	CCNNGG	4 cut(s)	92, 93, 162, 168
BssMI	GATC	5 cut(s)	47, 229, 288, 306, 334
BssNI	GRCGYC	3 cut(s)	113, 191, 395
BssSI	CACGAG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	16
Bst2UI	CCWGG	2 cut(s)	94, 164
BstACI	GRCGYC	3 cut(s)	113, 191, 395
BstBI	TTCGAA	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	259
BstHHI	GCGC	2 cut(s)	327, 381
BstKTI	GATC	5 cut(s)	50, 232, 291, 309, 337
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	5 cut(s)	47, 229, 288, 306, 334
BstMCI	CGRYCG	1 cut(s)	284
BstNI	CCWGG	2 cut(s)	94, 164
BstSCI	CCNGG	3 cut(s)	92, 162, 168
BstSLI	GKGCMC	1 cut(s)	17
BstX2I	RGATCY	2 cut(s)	229, 288
BstYI	RGATCY	2 cut(s)	229, 288
BsuI	GTATCC	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	65, 167
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	4 cut(s)	334, 361, 388, 415
BtsIMutI	CAGTG	4 cut(s)	334, 361, 388, 415
BveI	ACCTGC	1 cut(s)	225
CfoI	GCGC	2 cut(s)	327, 381
Cfr10I	RCCGGY	1 cut(s)	279
Cfr13I	GGNCC	6 cut(s)	89, 166, 202, 362, 389, 416
CseI	GACGC	2 cut(s)	199, 384
CspAI	ACCGGT	1 cut(s)	279
CviJI	RGCY	5 cut(s)	65, 126, 167, 175, 432
CviKI_1	RGCY	5 cut(s)	65, 126, 167, 175, 432
DdeI	CTNAG	1 cut(s)	274
DpnI	GATC	5 cut(s)	49, 231, 290, 308, 336
DpnII	GATC	5 cut(s)	47, 229, 288, 306, 334
DrdI	GACNNNNNNGTC	1 cut(s)	76
DriI	GACNNNNNGTC	1 cut(s)	87
DseDI	GACNNNNNNGTC	1 cut(s)	76
Eam1105I	GACNNNNNGTC	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	45
Eco47I	GGWCC	5 cut(s)	89, 202, 362, 389, 416
EcoO109I	RGGNCCY	2 cut(s)	166, 202
EcoRII	CCWGG	2 cut(s)	92, 162
Esp3I	CGTCTC	1 cut(s)	134
FaiI	YATR	2 cut(s)	52, 108
FaqI	GGGAC	2 cut(s)	75, 215
FblI	GTMKAC	1 cut(s)	80
FokI	GGATG	1 cut(s)	266
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	2 cut(s)	326, 380
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	65, 167
HapII	CCGG	7 cut(s)	43, 133, 151, 170, 280, 392, 419
HgaI	GACGC	2 cut(s)	199, 384
HhaI	GCGC	2 cut(s)	327, 381
Hin1I	GRCGYC	3 cut(s)	113, 191, 395
Hin6I	GCGC	2 cut(s)	325, 379
HinP1I	GCGC	2 cut(s)	325, 379
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	4 cut(s)	32, 98, 243, 295
HpaII	CCGG	7 cut(s)	43, 133, 151, 170, 280, 392, 419
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	7 cut(s)	28, 122, 234, 286, 306, 339, 440
Hpy188III	TCNNGA	2 cut(s)	292, 348
Hpy8I	GTNNAC	1 cut(s)	81
Hpy99I	CGWCG	5 cut(s)	115, 118, 193, 343, 400
HpyAV	CCTTC	5 cut(s)	130, 220, 353, 380, 407
HpyCH4IV	ACGT	2 cut(s)	113, 143
HpyCH4V	TGCA	1 cut(s)	354
HpyF3I	CTNAG	1 cut(s)	274
HpySE526I	ACGT	2 cut(s)	113, 143
Hsp92I	GRCGYC	3 cut(s)	113, 191, 395
HspAI	GCGC	2 cut(s)	325, 379
Kzo9I	GATC	5 cut(s)	47, 229, 288, 306, 334
LmnI	GCTCC	2 cut(s)	131, 172
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	2 cut(s)	113, 143
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	5 cut(s)	49, 231, 290, 308, 336
MboI	GATC	5 cut(s)	47, 229, 288, 306, 334
MboII	GAAGA	1 cut(s)	427
MflI	RGATCY	2 cut(s)	229, 288
MhlI	GDGCHC	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	4 cut(s)	153, 231, 264, 362
MnlI	CCTC	5 cut(s)	22, 116, 261, 315, 363
MseI	TTAA	2 cut(s)	197, 210
MspI	CCGG	7 cut(s)	43, 133, 151, 170, 280, 392, 419
MspR9I	CCNGG	3 cut(s)	94, 164, 170
MvaI	CCWGG	2 cut(s)	94, 164
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	5 cut(s)	47, 229, 288, 306, 334
NlaIV	GGNNCC	6 cut(s)	41, 91, 127, 168, 203, 231
NmuCI	GTSAC	1 cut(s)	329
NspV	TTCGAA	1 cut(s)	74
PasI	CCCWGGG	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	185
PfeI	GAWTC	3 cut(s)	32, 243, 295
PflFI	GACNNNGTC	1 cut(s)	343
PinAI	ACCGGT	1 cut(s)	279
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PpuMI	RGGWCCY	1 cut(s)	202
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	2 cut(s)	92, 162
PspGI	CCWGG	2 cut(s)	92, 162
PspN4I	GGNNCC	6 cut(s)	41, 91, 127, 168, 203, 231
PspPI	GGNCC	6 cut(s)	89, 166, 202, 362, 389, 416
PspPPI	RGGWCCY	1 cut(s)	202
PsuI	RGATCY	2 cut(s)	229, 288
PsyI	GACNNNGTC	1 cut(s)	343
SalI	GTCGAC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	197, 210
Sau3AI	GATC	5 cut(s)	47, 229, 288, 306, 334
Sau96I	GGNCC	6 cut(s)	89, 166, 202, 362, 389, 416
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	3 cut(s)	94, 164, 170
SduI	GDGCHC	1 cut(s)	17
SfaNI	GCATC	1 cut(s)	341
SfuI	TTCGAA	1 cut(s)	74
SinI	GGWCC	5 cut(s)	89, 202, 362, 389, 416
SsiI	CCGC	2 cut(s)	56, 422
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	3 cut(s)	92, 162, 168
TaiI	ACGT	2 cut(s)	116, 146
TaqI	TCGA	3 cut(s)	74, 80, 320
TfiI	GAWTC	3 cut(s)	32, 243, 295
Tru1I	TTAA	2 cut(s)	197, 210
Tru9I	TTAA	2 cut(s)	197, 210
TscAI	CASTG	4 cut(s)	334, 361, 388, 415
TseFI	GTSAC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	2 cut(s)	17, 270
TspRI	CASTG	4 cut(s)	334, 361, 388, 415
Tth111I	GACNNNGTC	1 cut(s)	343
VpaK11BI	GGWCC	5 cut(s)	89, 202, 362, 389, 416
XbaI	TCTAGA	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	80
XspI	CTAG	1 cut(s)	348
ZraI	GACGTC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.