Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0033787

Physical Location & Seq

Genomic Coordinates Forward (+)

19135975 .. 19154265

Gene Structure 18291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG121000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGATGCTTTTTCATGAATGGAGCGACAATAGATTCGAATTTCACGAGAATGTTCTTCTCCAGCGATTCGTCGAATTGGAAGCACGTGGATTTAGGGGGACGGAGTACAGGGAGAGGGATAGGCAGAAGCTTCTGGAGCGGACGAAGTTGGAGAATCAGAGTACTAGTGAAAGCCATTCACTCTACTCCCACGTAGTCCGTTCTCTATCTCTCCGGCGGAGCCTCTCAGGGACTCATTCGTTTTCCATAGGAGTCACAAAAGTCATTACTACAAATCTCTTGATAGAACTGAGTGCTGATGACGTAGATTATGTCTACCAAAGGAGTCCTGGGAAAATCTTAAGCATCAATATCCCAACATTTGAGGCCCTTACTCAATTTGGAACTGCTACAATCACAGCAAAGAATACTGGTGAAGTGGAAGCATCCTATTGCTTGACGGGTAATCCCTTTAAGCCACCAAAGACAAGAACAACTGGTTTCTTTGACTCCATTGAAAGCTTTTGGAACCATGTGTGGAAGACTTTTATAGATTTCATCACTGGAAAATCTTGCAGTACCCAACCTCCAGATCGTGACGGAGGCAAGGGCTTCAACTATGGAGGCTCACTAAGACCCAGATTCTCTTTCACCACTAAAGACACAGACAAAGGCATTCGCATTCAACCCATTAAAGCCAAAGCAACAACCACCGAGGCCTCTCCGTTTCCTCTGCTTCAGTCTCCCCGAGCTAAAGACTCTCCCTCTGAGGTGATAATGGAAATACCACTAGAACTGATGTTAACTATAAGCCAAAAGCTCCCATGGATGTTTTTCCCAGATATAGTACCGGTGGGCCACCCAATATTTGATATCATCAATTCAACAAGAAGAGAAGCTACGCTCAGCTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

298

Amino Acids

33.92

Weight (kDa)

8.46

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAP2-GCS1	PF10699	76 - 147	6.1e-21	Male gamete fusion factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0033787)

Species	Orthologous Gene IDs
rosa_samantha	Rh4DG121000 Rh7CG453900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	2 cut(s)	139, 217
AcsI	RAATTY	1 cut(s)	38
AcuI	CTGAAG	1 cut(s)	701
AcvI	CACGTG	1 cut(s)	86
AfaI	GTAC	4 cut(s)	107, 163, 559, 828
AflII	CTTAAG	1 cut(s)	340
AgeI	ACCGGT	1 cut(s)	829
AgsI	TTSAA	4 cut(s)	497, 595, 665, 864
AhlI	ACTAGT	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	6 cut(s)	130, 501, 731, 799, 878, 888
AluI	AGCT	6 cut(s)	130, 501, 731, 799, 878, 888
Alw26I	GTCTC	1 cut(s)	726
Ama87I	CYCGRG	1 cut(s)	726
AoxI	GGCC	3 cut(s)	366, 696, 835
ApoI	RAATTY	1 cut(s)	38
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AsiGI	ACCGGT	1 cut(s)	829
AspS9I	GGNCC	2 cut(s)	367, 835
AsuHPI	GGTGA	3 cut(s)	425, 622, 763
AsuII	TTCGAA	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	726
BarI	GAAGNNNNNNTAC	2 cut(s)	862, 894
BauI	CACGAG	1 cut(s)	44
BbrPI	CACGTG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	527
BciT130I	CCWGG	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	726
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	2 cut(s)	165, 770
BfrI	CTTAAG	1 cut(s)	340
BlpI	GCTNAGC	1 cut(s)	884
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	330
BmeT110I	CYCGRG	1 cut(s)	726
BmgT120I	GGNCC	2 cut(s)	367, 835
BmiI	GGNNCC	2 cut(s)	221, 509
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	2 cut(s)	354, 434
BpiI	GAAGAC	1 cut(s)	527
BpmI	CTGGAG	3 cut(s)	44, 155, 552
Bpu1102I	GCTNAGC	1 cut(s)	884
Bpu14I	TTCGAA	1 cut(s)	36
BsaAI	YACGTR	2 cut(s)	86, 193
BsaJI	CCNNGG	3 cut(s)	329, 693, 803
BsaWI	WCCGGW	1 cut(s)	829
BsaXI	ACNNNNNCTCC	2 cut(s)	550, 580
Bse118I	RCCGGY	1 cut(s)	829
Bse1I	ACTGG	3 cut(s)	415, 481, 547
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	329, 693, 803
BseGI	GGATG	2 cut(s)	425, 813
BseMII	CTCAG	3 cut(s)	240, 281, 738
BseNI	ACTGG	3 cut(s)	415, 481, 547
BshFI	GGCC	3 cut(s)	368, 698, 837
BshTI	ACCGGT	1 cut(s)	829
BsiHKCI	CYCGRG	1 cut(s)	726
BsiSI	CCGG	2 cut(s)	214, 830
BslFI	GGGAC	2 cut(s)	112, 244
BsmAI	GTCTC	1 cut(s)	726
BsmFI	GGGAC	2 cut(s)	112, 244
BsmI	GAATGC	2 cut(s)	654, 660
BsnI	GGCC	3 cut(s)	368, 698, 837
BsoBI	CYCGRG	1 cut(s)	726
Bsp119I	TTCGAA	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	571
Bsp1720I	GCTNAGC	1 cut(s)	884
Bsp19I	CCATGG	1 cut(s)	803
BspACI	CCGC	2 cut(s)	139, 217
BspANI	GGCC	3 cut(s)	368, 698, 837
BspCNI	CTCAG	4 cut(s)	239, 282, 739, 897
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	221, 509
BspT104I	TTCGAA	1 cut(s)	36
BspTI	CTTAAG	1 cut(s)	340
BsrBI	CCGCTC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	829
BsrI	ACTGG	3 cut(s)	415, 481, 547
BssAI	RCCGGY	1 cut(s)	829
BssECI	CCNNGG	3 cut(s)	329, 693, 803
BssMI	GATC	1 cut(s)	571
BssSI	CACGAG	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	803
Bst2BI	CACGAG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	330
Bst6I	CTCTTC	1 cut(s)	865
BstAFI	CTTAAG	1 cut(s)	340
BstBAI	YACGTR	2 cut(s)	86, 193
BstBI	TTCGAA	1 cut(s)	36
BstDEI	CTNAG	5 cut(s)	226, 290, 611, 747, 884
BstDSI	CCRYGG	1 cut(s)	803
BstF5I	GGATG	2 cut(s)	425, 813
BstKTI	GATC	1 cut(s)	574
BstMAI	GTCTC	1 cut(s)	726
BstMBI	GATC	1 cut(s)	571
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	328
BstV2I	GAAGAC	1 cut(s)	527
BsuRI	GGCC	3 cut(s)	368, 698, 837
BtgI	CCRYGG	1 cut(s)	803
BtsCI	GGATG	2 cut(s)	425, 813
BtsIMutI	CAGTG	1 cut(s)	540
CciI	TCATGA	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	829
Cfr13I	GGNCC	2 cut(s)	367, 835
Csp6I	GTAC	4 cut(s)	106, 162, 558, 827
CspAI	ACCGGT	1 cut(s)	829
CviAII	CATG	3 cut(s)	14, 512, 804
CviQI	GTAC	4 cut(s)	106, 162, 558, 827
DdeI	CTNAG	5 cut(s)	226, 290, 611, 747, 884
DpnI	GATC	1 cut(s)	573
DpnII	GATC	1 cut(s)	571
Eam1104I	CTCTTC	1 cut(s)	865
EarI	CTCTTC	1 cut(s)	865
EciI	GGCGGA	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	803
Eco147I	AGGCCT	1 cut(s)	698
Eco32I	GATATC	1 cut(s)	853
Eco57I	CTGAAG	1 cut(s)	701
Eco72I	CACGTG	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	726
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	328
EcoRV	GATATC	1 cut(s)	853
EcoT14I	CCWWGG	1 cut(s)	803
ErhI	CCWWGG	1 cut(s)	803
FaeI	CATG	3 cut(s)	17, 515, 807
FaiI	YATR	9 cut(s)	15, 248, 312, 513, 530, 600, 788, 805, 824
FaqI	GGGAC	2 cut(s)	112, 244
FatI	CATG	3 cut(s)	13, 511, 803
FblI	GTMKAC	1 cut(s)	315
FokI	GGATG	2 cut(s)	412, 820
FspBI	CTAG	2 cut(s)	165, 770
GsuI	CTGGAG	3 cut(s)	44, 155, 552
HaeIII	GGCC	3 cut(s)	368, 698, 837
HapII	CCGG	2 cut(s)	214, 830
Hin1II	CATG	3 cut(s)	17, 515, 807
HincII	GTYRAC	1 cut(s)	783
HindII	GTYRAC	1 cut(s)	783
HindIII	AAGCTT	2 cut(s)	128, 499
HinfI	GANTC	9 cut(s)	33, 66, 154, 232, 252, 325, 488, 621, 737
HpaI	GTTAAC	1 cut(s)	783
HpaII	CCGG	2 cut(s)	214, 830
HphI	GGTGA	3 cut(s)	425, 622, 763
Hpy166II	GTNNAC	2 cut(s)	316, 783
Hpy188I	TCNGA	2 cut(s)	159, 748
Hpy188III	TCNNGA	6 cut(s)	14, 44, 134, 280, 569, 575
Hpy8I	GTNNAC	2 cut(s)	316, 783
Hpy99I	CGWCG	1 cut(s)	74
HpyCH4IV	ACGT	3 cut(s)	85, 192, 303
HpyCH4V	TGCA	1 cut(s)	555
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	5 cut(s)	226, 290, 611, 747, 884
HpySE526I	ACGT	3 cut(s)	85, 192, 303
Hsp92II	CATG	3 cut(s)	17, 515, 807
KspAI	GTTAAC	1 cut(s)	783
Kzo9I	GATC	1 cut(s)	571
LmnI	GCTCC	4 cut(s)	21, 136, 219, 804
LweI	GCATC	2 cut(s)	354, 434
MaeI	CTAG	2 cut(s)	165, 770
MaeII	ACGT	3 cut(s)	85, 192, 303
MaeIII	GTNAC	2 cut(s)	253, 575
MalI	GATC	1 cut(s)	573
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	1 cut(s)	571
MboII	GAAGA	3 cut(s)	47, 532, 882
MluCI	AATT	4 cut(s)	38, 74, 377, 859
MlyI	GAGTC	5 cut(s)	226, 261, 334, 482, 731
MmeI	TCCRAC	1 cut(s)	129
MseI	TTAA	4 cut(s)	341, 453, 672, 782
MslI	CAYNNNNRTG	1 cut(s)	48
MspCI	CTTAAG	1 cut(s)	340
MspI	CCGG	2 cut(s)	214, 830
MspR9I	CCNGG	1 cut(s)	330
Mva1269I	GAATGC	2 cut(s)	654, 660
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	136
NcoI	CCATGG	1 cut(s)	803
NdeII	GATC	1 cut(s)	571
NlaIII	CATG	3 cut(s)	17, 515, 807
NlaIV	GGNNCC	2 cut(s)	221, 509
NmuCI	GTSAC	2 cut(s)	253, 575
NspV	TTCGAA	1 cut(s)	36
PagI	TCATGA	1 cut(s)	13
PceI	AGGCCT	1 cut(s)	698
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	2 cut(s)	654, 660
PfeI	GAWTC	4 cut(s)	33, 66, 154, 621
PinAI	ACCGGT	1 cut(s)	829
PleI	GAGTC	5 cut(s)	226, 260, 333, 482, 731
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
PpsI	GAGTC	5 cut(s)	226, 260, 333, 482, 731
Ppu21I	YACGTR	2 cut(s)	86, 193
Psp6I	CCWGG	1 cut(s)	328
PspCI	CACGTG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	221, 509
PspPI	GGNCC	2 cut(s)	367, 835
RsaI	GTAC	4 cut(s)	107, 163, 559, 828
RsaNI	GTAC	4 cut(s)	106, 162, 558, 827
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	4 cut(s)	341, 453, 672, 782
Sau3AI	GATC	1 cut(s)	571
Sau96I	GGNCC	2 cut(s)	367, 835
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	5 cut(s)	226, 261, 334, 482, 731
ScrFI	CCNGG	1 cut(s)	330
SfaNI	GCATC	2 cut(s)	354, 434
SfuI	TTCGAA	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	4 cut(s)	38, 74, 377, 859
SseBI	AGGCCT	1 cut(s)	698
SsiI	CCGC	2 cut(s)	139, 217
SspI	AATATT	1 cut(s)	846
SspMI	CTAG	2 cut(s)	165, 770
StuI	AGGCCT	1 cut(s)	698
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	803
TaiI	ACGT	3 cut(s)	88, 195, 306
TaqI	TCGA	2 cut(s)	36, 72
TasI	AATT	4 cut(s)	38, 74, 377, 859
TatI	WGTACW	2 cut(s)	105, 161
TfiI	GAWTC	4 cut(s)	33, 66, 154, 621
Tru1I	TTAA	4 cut(s)	341, 453, 672, 782
Tru9I	TTAA	4 cut(s)	341, 453, 672, 782
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	2 cut(s)	253, 575
Tsp45I	GTSAC	2 cut(s)	253, 575
TspDTI	ATGAA	3 cut(s)	30, 526, 880
TspGWI	ACGGA	4 cut(s)	116, 188, 594, 693
TspRI	CASTG	1 cut(s)	547
Vha464I	CTTAAG	1 cut(s)	340
XapI	RAATTY	1 cut(s)	38
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	2 cut(s)	165, 770
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.