Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0025520

Physical Location & Seq

Genomic Coordinates Forward (+)

48161629 .. 48161952

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG263000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCCCTCTCTACAAACTCCAATACTAACCAGGTGTCCAAAAACTGTGACAAACAAGAGATCCAAGATTTCTTGCAATTCGATGTCGTTTCTGACTACTCAGATCACCACTACAGTGATGTGAAAAAGAATGAAAACGATCGCGGGGATTGGTTCATGGATGGCAACAGTAAGGTATACAAACATATCATGAGGGAGTGGAGAATTCTTAACGACGGACTCCCTGACAACATTTACGTTCGCGCATATGAGACTGGTATCGACCTCATGAAGGCCATCATAGTCGGAGCAGCCGGCACACCCTACGACGACGGACTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

107

Amino Acids

12.27

Weight (kDa)

4.69

Isoelectric Point (pI)

22.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025520)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001900.1_g000003 Rmu_sc0005223.1_g000017
rosa_samantha	Rh4DG263000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	2 cut(s)	144, 243
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	30
AleI	CACNNNNGTG	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	2 cut(s)	3, 273
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	2 cut(s)	155, 284
BciT130I	CCWGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	302
Bsh1236I	CGCG	2 cut(s)	144, 243
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	2 cut(s)	5, 275
BsiEI	CGRYCG	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	5, 275
Bsp143I	GATC	3 cut(s)	60, 103, 139
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	2 cut(s)	5, 275
BspCNI	CTCAG	1 cut(s)	113
BspFNI	CGCG	2 cut(s)	144, 243
BspHI	TCATGA	2 cut(s)	189, 267
BspPI	GGATC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	293
BssMI	GATC	3 cut(s)	60, 103, 139
BssNAI	GTATAC	1 cut(s)	178
Bst1107I	GTATAC	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	3 cut(s)	47, 116, 170
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	100
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	2 cut(s)	144, 243
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	3 cut(s)	63, 106, 142
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	3 cut(s)	60, 103, 139
BstMCI	CGRYCG	1 cut(s)	142
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	112
BstUI	CGCG	2 cut(s)	144, 243
BstV1I	GCAGC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BstZ17I	GTATAC	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	5, 275
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	295
CciI	TCATGA	2 cut(s)	189, 267
CfoI	GCGC	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	4
CsiI	ACCWGGT	1 cut(s)	30
CviAII	CATG	3 cut(s)	157, 190, 268
CviJI	RGCY	3 cut(s)	5, 275, 293
CviKI_1	RGCY	3 cut(s)	5, 275, 293
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	3 cut(s)	62, 105, 141
DpnII	GATC	3 cut(s)	60, 103, 139
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	30
FaeI	CATG	3 cut(s)	160, 193, 271
FaiI	YATR	8 cut(s)	158, 178, 186, 191, 247, 249, 269, 281
FatI	CATG	3 cut(s)	156, 189, 267
FauI	CCCGC	1 cut(s)	137
FauNDI	CATATG	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	291
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	5, 275
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	3 cut(s)	160, 193, 271
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	2 cut(s)	219, 315
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	3 cut(s)	94, 103, 287
Hpy188III	TCNNGA	2 cut(s)	190, 268
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	3 cut(s)	218, 311, 314
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	3 cut(s)	47, 116, 170
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	1 cut(s)	76
HpyF3I	CTNAG	1 cut(s)	100
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	160, 193, 271
HspAI	GCGC	1 cut(s)	243
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	60, 103, 139
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	5 cut(s)	17, 44, 237, 240, 307
Lsp1109I	GCAGC	1 cut(s)	302
MabI	ACCWGGT	1 cut(s)	30
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	3 cut(s)	62, 105, 141
MboI	GATC	3 cut(s)	60, 103, 139
MflI	RGATCY	1 cut(s)	60
MluCI	AATT	2 cut(s)	77, 204
MlyI	GAGTC	2 cut(s)	213, 309
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	3 cut(s)	17, 186, 275
MroNI	GCCGGC	1 cut(s)	293
MseI	TTAA	2 cut(s)	210, 322
MslI	CAYNNNNRTG	1 cut(s)	114
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	2 cut(s)	144, 243
NaeI	GCCGGC	1 cut(s)	295
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	3 cut(s)	60, 103, 139
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	3 cut(s)	160, 193, 271
NmuCI	GTSAC	1 cut(s)	47
OliI	CACNNNNGTG	1 cut(s)	114
PagI	TCATGA	2 cut(s)	189, 267
PdiI	GCCGGC	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	292
Ple19I	CGATCG	1 cut(s)	142
PleI	GAGTC	2 cut(s)	213, 309
PpsI	GAGTC	2 cut(s)	213, 309
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	60
PvuI	CGATCG	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	210, 322
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	3 cut(s)	60, 103, 139
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	213, 309
ScrFI	CCNGG	1 cut(s)	32
SetI	ASST	4 cut(s)	36, 177, 240, 267
SexAI	ACCWGGT	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	2 cut(s)	77, 204
SsiI	CCGC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	3 cut(s)	47, 116, 170
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	81, 261
TasI	AATT	2 cut(s)	77, 204
Tru1I	TTAA	2 cut(s)	210, 322
Tru9I	TTAA	2 cut(s)	210, 322
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	3 cut(s)	145, 147, 284
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	121
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.