Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0023044

Physical Location & Seq

Genomic Coordinates Reverse (-)

55323377 .. 55323592

Gene Structure 216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG330400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGAAATATCTGAGTCATTGCTGGTCGACGATACAAAATCAAGGCCATTGAGGACGTCCAAGTGCCGGAATGGAAGGAGCAGCACCGTCATAGGGCTGGTGGTCAGCGTCGTGCTGGGGTCCCTGTTCTGCAATATTACCCACAAGCTGAATCTGACGGTGGGGATCATCACGTCCTTGAATGTCGCGGCTAATTTGCTCGGCTTGAAGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

71

Amino Acids

7.52

Weight (kDa)

9.69

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023044)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000440.1_g000004
rosa_samantha	Rh3DG372100 Rh4CG349000 Rh4DG330400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	1 cut(s)	188
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	1 cut(s)	173
AcyI	GRCGYC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	66, 93
AgsI	TTSAA	2 cut(s)	181, 208
AjiI	CACGTC	1 cut(s)	174
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	93
BisI	GCNGC	2 cut(s)	82, 189
BlsI	GCNGC	2 cut(s)	83, 190
Bme18I	GGWCC	1 cut(s)	120
BmgBI	CACGTC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	2 cut(s)	121, 122
BsaHI	GRCGYC	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 93
Bse3DI	GCAATG	1 cut(s)	17
BseLI	CCNNNNNNNGG	2 cut(s)	66, 93
BseMI	GCAATG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	93
BseYI	CCCAGC	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	2 cut(s)	66, 93
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	4
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	2 cut(s)	121, 122
BspPI	GGATC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	17
BssMI	GATC	1 cut(s)	165
BssNI	GRCGYC	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	88, 160
BstACI	GRCGYC	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	12
BstFNI	CGCG	1 cut(s)	188
BstKTI	GATC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	165
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	46
BtrI	CACGTC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	120
CseI	GACGC	1 cut(s)	97
CviJI	RGCY	5 cut(s)	46, 97, 148, 191, 204
CviKI_1	RGCY	5 cut(s)	46, 97, 148, 191, 204
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	120
FaiI	YATR	1 cut(s)	92
FaqI	GGGAC	1 cut(s)	106
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	82, 189
Fsp4HI	GCNGC	2 cut(s)	82, 189
GluI	GCNGC	2 cut(s)	82, 189
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	1 cut(s)	67
HgaI	GACGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	2 cut(s)	14, 151
HpaII	CCGG	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	13, 156
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	2 cut(s)	32, 113
HpyAV	CCTTC	2 cut(s)	69, 202
HpyCH4III	ACNGT	2 cut(s)	88, 160
HpyCH4IV	ACGT	2 cut(s)	56, 173
HpyCH4V	TGCA	1 cut(s)	132
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	2 cut(s)	56, 173
Hsp92I	GRCGYC	1 cut(s)	56
KflI	GGGWCCC	1 cut(s)	120
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	5 cut(s)	8, 80, 83, 101, 137
Lsp1109I	GCAGC	1 cut(s)	93
MaeII	ACGT	2 cut(s)	56, 173
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MluCI	AATT	1 cut(s)	193
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	1 cut(s)	45
MspI	CCGG	1 cut(s)	67
MvnI	CGCG	1 cut(s)	188
NdeII	GATC	1 cut(s)	165
NlaIV	GGNNCC	2 cut(s)	121, 122
NmeAIII	GCCGAG	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	83, 190
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PpuMI	RGGWCCY	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	121, 122
PspPI	GGNCC	1 cut(s)	120
PspPPI	RGGWCCY	1 cut(s)	120
SalI	GTCGAC	1 cut(s)	26
SatI	GCNGC	2 cut(s)	82, 189
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	1 cut(s)	23
SetI	ASST	3 cut(s)	59, 150, 176
SinI	GGWCC	1 cut(s)	120
Sse9I	AATT	1 cut(s)	193
SsiI	CCGC	1 cut(s)	188
SspI	AATATT	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	88, 160
TaiI	ACGT	2 cut(s)	59, 176
TaqI	TCGA	1 cut(s)	27
TasI	AATT	1 cut(s)	193
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	151
TseI	GCWGC	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	27
ZraI	GACGTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.