Rh4DG351800

Protein of unknown function (DUF1262)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
57330943 .. 57331275
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG351800.1

Sequence Viewer

Length: 333 bp
ATGGAGATTATGTATTCGCAACGTTGGCGTGAGAGGGGTGACTTTACTGCCAAGTCGATCAGTTGCTTCAGATGGCATTCCTCCACGCTTCTTGAGGGAGAAAGGGTGGAGGGTGTACAGGATAGAACACCCTATAATTATGAATTAGGTGAAGCTCAAGGGCTTGACTCTTCACTACGGTCGCACCTTCCAGGGTTCGACTTTCCATTATCATCGAATCAGAACGACTGTTCCGAAGCACTGGTGGTTGGCAAGTGGTATTGTCCTTTCATTTTTGTGAAGGAAGGAGGAGTGACGTTGAAGGAGCAAATGAATAAGGTGTGTGTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

12.63

Weight (kDa)

5.34

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030055)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0436551
rosa_samantha Rh4DG351800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 52
AfaI GTAC 1 cut(s) 117
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 1 cut(s) 190
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 50, 161
BccI CCATC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 192
BpuEI CTTGAG 2 cut(s) 113, 141
BsaJI CCNNGG 1 cut(s) 191
BsaXI ACNNNNNCTCC 3 cut(s) 26, 90, 120
Bse1I ACTGG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 303
Bsh1285I CGRYCG 1 cut(s) 182
BsiEI CGRYCG 1 cut(s) 182
BsmI GAATGC 1 cut(s) 76
Bsp1407I TGTACA 1 cut(s) 115
Bsp143I GATC 1 cut(s) 57
BsrGI TGTACA 1 cut(s) 115
BsrI ACTGG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 180, 230
Bst6I CTCTTC 1 cut(s) 175
BstAUI TGTACA 1 cut(s) 115
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstMCI CGRYCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 239
Csp6I GTAC 1 cut(s) 116
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviJI RGCY 2 cut(s) 155, 163
CviKI_1 RGCY 2 cut(s) 155, 163
CviQI GTAC 1 cut(s) 116
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 190
FaiI YATR 4 cut(s) 11, 135, 141, 331
HinfI GANTC 2 cut(s) 167, 217
HphI GGTGA 2 cut(s) 50, 161
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 3 cut(s) 71, 222, 235
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 116
HpyAV CCTTC 4 cut(s) 197, 274, 278, 295
HpyCH4III ACNGT 2 cut(s) 180, 230
HpyCH4IV ACGT 2 cut(s) 22, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpySE526I ACGT 2 cut(s) 22, 296
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 4 cut(s) 104, 177, 204, 227
MaeII ACGT 2 cut(s) 22, 296
MaeIII GTNAC 2 cut(s) 38, 292
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 162
MluCI AATT 2 cut(s) 136, 143
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 5 cut(s) 27, 88, 91, 103, 281
MslI CAYNNNNRTG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 192
Mva1269I GAATGC 1 cut(s) 76
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 1 cut(s) 57
NmuCI GTSAC 2 cut(s) 38, 292
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 217
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
Psp1406I AACGTT 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 275
Sau3AI GATC 1 cut(s) 57
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 192
SetI ASST 6 cut(s) 25, 151, 157, 189, 299, 321
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 92, 156
SmoI CTYRAG 2 cut(s) 92, 156
Sse9I AATT 2 cut(s) 136, 143
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 180, 230
TaiI ACGT 2 cut(s) 25, 299
TaqI TCGA 3 cut(s) 56, 198, 215
TasI AATT 2 cut(s) 136, 143
TatI WGTACW 1 cut(s) 115
TfiI GAWTC 1 cut(s) 217
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 2 cut(s) 38, 292
Tsp45I GTSAC 2 cut(s) 38, 292
TspDTI ATGAA 3 cut(s) 156, 259, 326
TspRI CASTG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.