Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0031133

Physical Location & Seq

Genomic Coordinates Reverse (-)

57520956 .. 57522282

Gene Structure 1327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG354300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCATTTTCTCCAACTCCCATCTCTGCACTTTCTTCCACCAACCCAACACTGCCCAAAAGGACTTCTTCACCTTTTACCACTGCAAATCCAATAGGCATACCCAAAGACCTCTACTTTAACCATGATGGTTCTGCCACAAAGAAGCTTCTGGCAGGGGTGAGCATGGTGGCAGAGCTGGTTGGGGTTACATTGGGTCCAAAGGGAAGGAATGTGGTGCTGCAGAATAAGTATGGACCTCCCAAGATTGTCAATGATGGTGAAACTGTTCTCAAAGAGATCGAGTTGGAGGACTCTGTGGAGAATGTCGGAGTTAAACTGTTAAGGCAAGCTGGAGCAAAAACAAATGACCTGGCCGGAGATGGTTCCACTACAGCTGTAATTCTTGCTCACGGTTTAATTACTGAAGGTGTGAAGGTTACTGCAGCTGGCATGAATCCCATTCAAATTGCTCGTGGGATTGAGAAGACTGCAGTGGCCCTAGTTTCTGAACTCAAATTGATGTCCAGAGAGGTACACTTGTTTTTTTCCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051082 GO:0061077

KEGG Pathways

Metabolic & Signaling

ko03018 ko04212 ko04940 ko05134 ko05152 map03018 map04212 map04940 map05134 map05152

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

178

Amino Acids

18.74

Weight (kDa)

8.86

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	57 - 172	1.2e-29	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0031133)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001464.1_g000027
rosa_samantha	Rh4DG354300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	354
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	1 cut(s)	516
AgsI	TTSAA	1 cut(s)	446
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	5 cut(s)	148, 178, 332, 377, 428
AluI	AGCT	5 cut(s)	148, 178, 332, 377, 428
AoxI	GGCC	2 cut(s)	354, 477
ApeKI	GCWGC	2 cut(s)	220, 425
Asp700I	GAANNNNTTC	1 cut(s)	267
AspS9I	GGNCC	3 cut(s)	197, 236, 478
AsuHPI	GGTGA	3 cut(s)	63, 172, 272
AvaII	GGWCC	2 cut(s)	197, 236
BaeI	ACNNNNGTAYC	1 cut(s)	506
BauI	CACGAG	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	473
BbvI	GCAGC	2 cut(s)	207, 437
BccI	CCATC	4 cut(s)	29, 122, 251, 356
BciT130I	CCWGG	1 cut(s)	353
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	4 cut(s)	221, 372, 423, 471
BisI	GCNGC	2 cut(s)	221, 426
BlsI	GCNGC	2 cut(s)	222, 427
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	2 cut(s)	197, 236
BmgT120I	GGNCC	3 cut(s)	197, 236, 478
BmiI	GGNNCC	2 cut(s)	198, 367
BmrFI	CCNGG	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	473
BpmI	CTGGAG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	207, 437
BsgI	GTGCAG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	356, 479
BsiSI	CCGG	1 cut(s)	357
BsnI	GGCC	2 cut(s)	356, 479
Bsp143I	GATC	1 cut(s)	279
BspANI	GGCC	2 cut(s)	356, 479
BspLI	GGNNCC	2 cut(s)	198, 367
BspMAI	CTGCAG	3 cut(s)	225, 427, 475
BssMI	GATC	1 cut(s)	279
BssSI	CACGAG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	3 cut(s)	268, 321, 395
BstC8I	GCNNGC	2 cut(s)	330, 430
BstKTI	GATC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	279
BstNI	CCWGG	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	351
BstSFI	CTRYAG	4 cut(s)	221, 372, 423, 471
BstV1I	GCAGC	2 cut(s)	207, 437
BstV2I	GAAGAC	1 cut(s)	473
BsuRI	GGCC	2 cut(s)	356, 479
BtsI	GCAGTG	3 cut(s)	50, 81, 480
BtsIMutI	CAGTG	3 cut(s)	50, 81, 480
Cac8I	GCNNGC	2 cut(s)	330, 430
Cfr13I	GGNCC	3 cut(s)	197, 236, 478
Csp6I	GTAC	1 cut(s)	515
CviAII	CATG	3 cut(s)	125, 166, 433
CviJI	RGCY	7 cut(s)	148, 178, 332, 356, 377, 428, 479
CviKI_1	RGCY	7 cut(s)	148, 178, 332, 356, 377, 428, 479
CviQI	GTAC	1 cut(s)	515
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	354
Eco47I	GGWCC	2 cut(s)	197, 236
Eco57I	CTGAAG	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	351
FaeI	CATG	3 cut(s)	128, 169, 436
FaiI	YATR	5 cut(s)	101, 126, 167, 234, 434
FalI	AAGNNNNNCTT	2 cut(s)	52, 84
FatI	CATG	3 cut(s)	124, 165, 432
Fnu4HI	GCNGC	2 cut(s)	221, 426
Fsp4HI	GCNGC	2 cut(s)	221, 426
FspBI	CTAG	1 cut(s)	482
GluI	GCNGC	2 cut(s)	221, 426
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	356, 479
HapII	CCGG	1 cut(s)	357
Hin1II	CATG	3 cut(s)	128, 169, 436
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	2 cut(s)	293, 436
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	3 cut(s)	63, 172, 272
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	2 cut(s)	311, 490
Hpy188III	TCNNGA	1 cut(s)	507
Hpy8I	GTNNAC	1 cut(s)	517
HpyAV	CCTTC	3 cut(s)	201, 401, 409
HpyCH4III	ACNGT	3 cut(s)	268, 321, 395
HpyCH4V	TGCA	5 cut(s)	29, 86, 223, 425, 473
Hsp92II	CATG	3 cut(s)	128, 169, 436
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	1 cut(s)	335
LpnPI	CCDG	9 cut(s)	137, 141, 164, 318, 338, 365, 370, 414, 520
Lsp1109I	GCAGC	2 cut(s)	207, 437
MaeI	CTAG	1 cut(s)	482
MaeIII	GTNAC	2 cut(s)	187, 418
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MboII	GAAGA	3 cut(s)	27, 60, 478
MluCI	AATT	4 cut(s)	381, 399, 447, 497
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	3 cut(s)	38, 267, 289
MnlI	CCTC	4 cut(s)	122, 249, 283, 505
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	4 cut(s)	120, 315, 323, 398
MspA1I	CMGCKG	2 cut(s)	377, 428
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	353
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	3 cut(s)	128, 169, 436
NlaIV	GGNNCC	2 cut(s)	198, 367
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	436
PkrI	GCNGC	2 cut(s)	222, 427
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	198, 367
PspPI	GGNCC	3 cut(s)	197, 236, 478
PstI	CTGCAG	3 cut(s)	225, 427, 475
PvuII	CAGCTG	2 cut(s)	377, 428
RsaI	GTAC	1 cut(s)	516
RsaNI	GTAC	1 cut(s)	515
SaqAI	TTAA	4 cut(s)	120, 315, 323, 398
SatI	GCNGC	2 cut(s)	221, 426
Sau3AI	GATC	1 cut(s)	279
Sau96I	GGNCC	3 cut(s)	197, 236, 478
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	353
SfcI	CTRYAG	4 cut(s)	221, 372, 423, 471
SinI	GGWCC	2 cut(s)	197, 236
Sse9I	AATT	4 cut(s)	381, 399, 447, 497
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	351
TaaI	ACNGT	3 cut(s)	268, 321, 395
TaqI	TCGA	1 cut(s)	282
TasI	AATT	4 cut(s)	381, 399, 447, 497
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	4 cut(s)	120, 315, 323, 398
Tru9I	TTAA	4 cut(s)	120, 315, 323, 398
TscAI	CASTG	3 cut(s)	57, 88, 480
TseI	GCWGC	2 cut(s)	220, 425
TspDTI	ATGAA	1 cut(s)	449
TspRI	CASTG	3 cut(s)	57, 88, 480
VpaK11BI	GGWCC	2 cut(s)	197, 236
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.