Rh4DG382700

Protein kinase 2B, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
60013905 .. 60014231
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG382700.1

Sequence Viewer

Length: 327 bp
ATGGCCGGAGATCTTATACAGTGGGCTGGACCATATCTTTGCAACAAGCAACAACTGCATCAAGTGATTGACCAGAGACTGGGAAGGAACTTCCCAAAGAAAGAGGCTCAAAAGTTTGCGGAACTCATCCTCCACTGCCTTGCTTCAAACCCCAAGAGCAGACCAATAATGACTGAAGTTGTAGCTGAGTTGAAGGACTTACAAGAAAATACAAGCAGCAGCAGTAACAGCAGTACTCCGAACTCGTACCATACTCCTACATTTACCCCGTGCCCTCCTCCATACAAAATACTTTTACCTAGACGAAATGGATGTCAGACAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.16

Weight (kDa)

9.21

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0026605)

Species Orthologous Gene IDs
rosa_samantha Rh4BG389000 Rh4CG403500 Rh4DG382700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 79
AciI CCGC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 2 cut(s) 235, 248
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 2 cut(s) 147, 193
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 70
AlwNI CAGNNNCTG 1 cut(s) 79
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 216, 219
ArsI GACNNNNNNTTYG 3 cut(s) 21, 53, 298
AspS9I GGNCC 1 cut(s) 29
AvaII GGWCC 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 275
BbvI GCAGC 2 cut(s) 228, 231
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 1 cut(s) 300
BglII AGATCT 1 cut(s) 10
BisI GCNGC 2 cut(s) 217, 220
BlsI GCNGC 2 cut(s) 218, 221
BmcAI AGTACT 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 29
BmrI ACTGGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 67
BmuI ACTGGG 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 126, 317
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 267
BseSI GKGCMC 1 cut(s) 275
BseXI GCAGC 2 cut(s) 228, 231
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 70
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 1 cut(s) 119
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 178
BsrI ACTGG 1 cut(s) 84
BssMI GATC 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 21
BstAPI GCANNNNNTGC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 126, 317
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 2 cut(s) 55, 228
BstSLI GKGCMC 1 cut(s) 275
BstV1I GCAGC 2 cut(s) 228, 231
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 126, 317
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 26, 133
CaiI CAGNNNCTG 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 2 cut(s) 234, 247
CviJI RGCY 4 cut(s) 5, 26, 107, 185
CviKI_1 RGCY 4 cut(s) 5, 26, 107, 185
CviQI GTAC 2 cut(s) 234, 247
DdeI CTNAG 1 cut(s) 186
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 195
FaiI YATR 4 cut(s) 17, 34, 252, 283
Fnu4HI GCNGC 2 cut(s) 217, 220
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 2 cut(s) 217, 220
FspBI CTAG 1 cut(s) 300
GluI GCNGC 2 cut(s) 217, 220
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 6
HpaII CCGG 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 240, 318
HpyAV CCTTC 2 cut(s) 78, 187
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4V TGCA 2 cut(s) 42, 58
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 228
HpyF3I CTNAG 1 cut(s) 186
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 4 cut(s) 12, 19, 65, 86
Lsp1109I GCAGC 2 cut(s) 228, 231
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 224
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 275
MnlI CCTC 4 cut(s) 97, 140, 285, 288
MspI CCGG 1 cut(s) 6
MwoI GCNNNNNNNGC 2 cut(s) 55, 228
NdeII GATC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 79
PkrI GCNGC 2 cut(s) 218, 221
PspPI GGNCC 1 cut(s) 29
PstNI CAGNNNCTG 1 cut(s) 79
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 2 cut(s) 235, 248
RsaNI GTAC 2 cut(s) 234, 247
SatI GCNGC 2 cut(s) 217, 220
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 29
ScaI AGTACT 1 cut(s) 235
SduI GDGCHC 1 cut(s) 275
SetI ASST 2 cut(s) 187, 301
SfaNI GCATC 1 cut(s) 67
SinI GGWCC 1 cut(s) 29
SsiI CCGC 1 cut(s) 119
SspMI CTAG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 21
TatI WGTACW 1 cut(s) 233
TscAI CASTG 2 cut(s) 26, 140
TseI GCWGC 2 cut(s) 216, 219
TspRI CASTG 2 cut(s) 26, 140
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 29
XspI CTAG 1 cut(s) 300
ZrmI AGTACT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.