Rh5AG009400

phototropin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0032720
Physical Location & Seq
Reverse (-)
680544 .. 686553
6010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG009400.1

Sequence Viewer

Length: 246 bp
ATGAAGCAACATAATTATGAACTTATGATTATCACATTGAATTCTTGGTATTTTCGTGCTCATAGGTCAACTGTAGGAAATCAAATCATCAAGAAACAAGAAGATTTAGATGAATATAGTTCAAAGGCTGCTCGTCCAAAGCCTCATAGAAAGGATAGCCCACCTTGGAGAGCTATTCAAAAGTCCATGGATCTGCAGATGAGTGAACTTCAGTTGAAGATGCATTTGAGTCTGCCAATGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

81

Amino Acids

9.67

Weight (kDa)

9.75

Isoelectric Point (pI)

63.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032720)

Species Orthologous Gene IDs
rosa_samantha Rh5AG009400 Rh5CG010500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 198
AcsI RAATTY 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 194
AgsI TTSAA 4 cut(s) 40, 123, 179, 217
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw21I GWGCWC 1 cut(s) 61
AlwI GGATC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 115
BfmI CTRYAG 2 cut(s) 72, 194
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BmsI GCATC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 164, 186
BseDI CCNNGG 2 cut(s) 164, 186
BseXI GCAGC 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 1 cut(s) 190
Bsp19I CCATGG 1 cut(s) 186
BspMAI CTGCAG 1 cut(s) 198
BspPI GGATC 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 164, 186
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 2 cut(s) 164, 186
Bst4CI ACNGT 1 cut(s) 73
BstDSI CCRYGG 1 cut(s) 186
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstSFI CTRYAG 2 cut(s) 72, 194
BstV1I GCAGC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 186
CviAII CATG 1 cut(s) 187
CviJI RGCY 4 cut(s) 128, 142, 159, 173
CviKI_1 RGCY 4 cut(s) 128, 142, 159, 173
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eco130I CCWWGG 2 cut(s) 164, 186
Eco57I CTGAAG 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 40
EcoT14I CCWWGG 2 cut(s) 164, 186
EcoT22I ATGCAT 1 cut(s) 225
ErhI CCWWGG 2 cut(s) 164, 186
FaeI CATG 1 cut(s) 190
FaiI YATR 7 cut(s) 12, 18, 26, 63, 117, 147, 188
FatI CATG 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 129
Hin1II CATG 1 cut(s) 190
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HinfI GANTC 1 cut(s) 229
Hpy166II GTNNAC 2 cut(s) 69, 206
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 2 cut(s) 69, 206
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 196, 223
Hsp92II CATG 1 cut(s) 190
Kzo9I GATC 1 cut(s) 190
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 210
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 2 cut(s) 113, 229
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 3 cut(s) 13, 40, 241
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 1 cut(s) 153
Mph1103I ATGCAT 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 15
NcoI CCATGG 1 cut(s) 186
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 190
NsiI ATGCAT 1 cut(s) 225
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PstI CTGCAG 1 cut(s) 198
PsuI RGATCY 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 15
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 1 cut(s) 238
SduI GDGCHC 1 cut(s) 61
SetI ASST 3 cut(s) 68, 166, 175
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 2 cut(s) 72, 194
SgeI CNNG 7 cut(s) 57, 68, 103, 110, 144, 177, 199
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 3 cut(s) 13, 40, 241
StyI CCWWGG 2 cut(s) 164, 186
TaaI ACNGT 1 cut(s) 73
TasI AATT 3 cut(s) 13, 40, 241
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 3 cut(s) 17, 33, 126
XapI RAATTY 1 cut(s) 40
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.