Rh5AG379600

TENA/THI-4/PQQC family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
64806070 .. 64815330
9261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG379600.1

Sequence Viewer

Length: 2019 bp
ATGCTTTTTCCTTCTTCATCTGTTAGATATGCATGGGCTGAGGAGAGTACAGCAATTGGGGGAAACAAATCGGCCCAAGCTGCAATTTGTGGGTTGAGGCAGGGAGTTGAAGAGGAACACACTTACCTCTCCTCCCAATTGGAGAAATGGGGGGTAGATGCCTCCAAATACTCCTCTGAAGCAGTTCAGTATTGCCAGTTTATCACTGCTAAGTTTCCCTTTTGCAATGATGCACACTATGTTGCTTTCTTGTTAGCTTCAACGATTACCTTTATCAGTCTCTCTGCCTATTTGGCTAGAAAGTTAAAGCGAGTTGCACATCCTAAGTATCTTCATTGGATCGAAAGATTTGCCTCTGAAAGTTTTCAAGCCTCATGTATGCAAAATGAGCAAGTTTTGAATGATATCTGCAAGGATGCAAATTTGTCTTTGAACAGTGGTAAATTTGGTGGTTTTGGGATTGAAATACATTATCTTAAAGCTATGCAACTGTCAGTTAACTTCTTTGCCAGGCACGTGACTATTGAGGAATGTTGCATAGTTCCCTTGACAAAGGAACACAATCCTGCAAGGGAACTAATTCTTGTAGCATGTGCTTTGGATTCACCATGCTGCTCATATATGAAATGTGAAGCTTACACCAAAGATTTCACTTGTCTAGTGCTCAATATCATTCCTATTGTGAAGGTGGGATTCGTCCACGAAAATGTAAGGAATGCTTTGAGCCAATTAGCTGATTTTCAAGTAAAGGCCACGGGAATTAAAGACATTGATGAAGTCAATATCGGTCAAAGTTTCACTGATCTACTACTAACCATTGGTAGTAGTAAGAACACTTGCAATGCAAGAGTTCATGTTGTGGCGGCCCTTTATGATAATTACGATAATAAATTGAAGTCAGCTGTATCATCAGAGTGTATGGATAAATGTATTTTGCATACAAACTTGGAATCAAGTACTGTGAAACTTGATCTATTCAGGGAGATATCCAGAAATACCAATAATGAAAAGTTGCTCAGCATATATGTTGGCAATGGCATCGATGACCTAGGATGTCTTCTAGAGGCAGATATTGGCATTGTTCTCAATCCTTGCCCTGAGTTGTTGTTTCTGAGCACTCAGTTTGGAGTGTCGTTTGTGCCACTATGGGAGGTAACAGTGGCGAAACAGAAACAGATGCGTGAAGGGATACACTTTTTATGGAAATCAAGAACCGGGACCCTCTATGTAGTTAAAACTCTGGATGAAATTACAGCTTTCATGTATGGGGCATTTAAGATTGATTGCACACCAGAGACCAAAAATGCTAGTGGACCATATGAATCTTCATCATTAGGAAACCTGTTTTCAAGTTTGCCAAAACCGAAGAGTGCAAGCCAATCAGCATACTTTAGCTTGGTAGAGAATATGAGATTTGAGAAGCAGCAAGCTGAGAAGCCAGAGATATATTTGACTAGTGCTACTCCCAGGAAACCACCTAAGAAAGAAAAACTACCCTTAGCACTCATTTTGCCAAAGCCGAAGAATCTAAACCTATCTGTTGACTCTAGCAATGTACAGAAAAGGGAACTGGAAAAAAAGCAGACTGAGCAAGCAGATGGTAACCAGAAAGTTGAGAAGGCAGAAGATGATATCCAAATGCCACCAGCTAAGAAAGAAAAGCTACCATTAGCACTTCTTTTGCCAAAGCCTAAGAATCTAAACCCATTTGTTCACTCTAGCAATGTAGAGAAAAGGGAACTGGAAAAGCAGCAGGCTCGGCAAGCAGATGGTAATCAGAAATTTGAGGAGGAGAAAGATGATATCCAAATGCTACCATCTAAGAAAGAAAAGCTACCATTAGCACTGCTTTTGCCAAAGCCGAAGAATCTAAACCCATCTGTTGACTCTAGCAATGTAGAGAAAAAGGAACAGGCTGAGCAACAAGATGTGAACCAGAAGGAGGAAGATGTGGTAGAAGATGGAAATAAGCAAGTTGAGAAGGAAGAAGATATGCAAGCAGATGGGAAAACCAAATGA

Protein Analysis

672

Amino Acids

75.31

Weight (kDa)

6.15

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TENA_THI-4 PF03070 37 - 141 5.2e-06 TENA/THI-4/PQQC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025016)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0058131
rosa_roxburghii Rroxscaffold_1G00022480
rosa_samantha Rh5AG379600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 863
AclWI GGATC 1 cut(s) 347
AcsI RAATTY 3 cut(s) 421, 443, 1781
AcuI CTGAAG 1 cut(s) 198
AcvI CACGTG 1 cut(s) 517
AfaI GTAC 3 cut(s) 49, 958, 1557
AfiI CCNNNNNNNGG 1 cut(s) 1942
AgsI TTSAA 9 cut(s) 110, 261, 368, 400, 433, 464, 743, 895, 1350
AhlI ACTAGT 1 cut(s) 1454
AjnI CCWGG 2 cut(s) 509, 1466
Alw21I GWGCWC 2 cut(s) 666, 1118
Alw26I GTCTC 2 cut(s) 284, 1289
AlwI GGATC 1 cut(s) 347
AoxI GGCC 3 cut(s) 72, 750, 864
ApeKI GCWGC 4 cut(s) 80, 612, 1423, 1750
ApoI RAATTY 3 cut(s) 421, 443, 1781
Asp700I GAANNNNTTC 3 cut(s) 183, 363, 579
AspA2I CCTAGG 1 cut(s) 1048
AspS9I GGNCC 4 cut(s) 73, 865, 1218, 1313
AsuC2I CCSGG 1 cut(s) 1216
AsuHPI GGTGA 1 cut(s) 597
AvaII GGWCC 2 cut(s) 1218, 1313
AvrII CCTAGG 1 cut(s) 1048
BbrPI CACGTG 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 1049
Bbv12I GWGCWC 2 cut(s) 666, 1118
BbvCI CCTCAGC 1 cut(s) 39
BbvI GCAGC 4 cut(s) 67, 599, 1435, 1762
BccI CCATC 6 cut(s) 1592, 1763, 1825, 1885, 1955, 1997
BcgI CGANNNNNNTGC 6 cut(s) 332, 366, 1021, 1055, 1739, 1773
BciT130I CCWGG 2 cut(s) 511, 1468
BciVI GTATCC 1 cut(s) 1182
BcnI CCSGG 1 cut(s) 1216
BcoDI GTCTC 2 cut(s) 284, 1289
BcuI ACTAGT 1 cut(s) 1454
BfaI CTAG 9 cut(s) 297, 659, 1049, 1061, 1308, 1455, 1548, 1719, 1890
BfuI GTATCC 1 cut(s) 1182
BglI GCCNNNNNGGC 1 cut(s) 293
BisI GCNGC 5 cut(s) 81, 613, 864, 1424, 1751
BlnI CCTAGG 1 cut(s) 1048
BlpI GCTNAGC 2 cut(s) 1016, 1917
BlsI GCNGC 5 cut(s) 82, 614, 865, 1425, 1752
BmcAI AGTACT 1 cut(s) 958
Bme1390I CCNGG 3 cut(s) 511, 1216, 1468
Bme18I GGWCC 2 cut(s) 1218, 1313
BmgT120I GGNCC 4 cut(s) 73, 865, 1218, 1313
BmiI GGNNCC 2 cut(s) 1219, 1220
BmrFI CCNGG 3 cut(s) 511, 1216, 1468
BmsI GCATC 5 cut(s) 148, 220, 406, 1047, 1167
BpiI GAAGAC 1 cut(s) 1049
Bpu10I CCTNAGC 2 cut(s) 39, 1498
Bpu1102I GCTNAGC 2 cut(s) 1016, 1917
BpuMI CCSGG 1 cut(s) 1216
Bsa29I ATCGAT 1 cut(s) 1041
BsaAI YACGTR 1 cut(s) 517
BsaBI GATNNNNATC 1 cut(s) 1773
BsaI GGTCTC 1 cut(s) 1289
BsaJI CCNNGG 3 cut(s) 753, 1048, 1466
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 1942
Bse1I ACTGG 3 cut(s) 196, 1575, 1746
Bse3DI GCAATG 6 cut(s) 232, 847, 1039, 1558, 1729, 1900
Bse8I GATNNNNATC 1 cut(s) 1773
BseBI CCWGG 2 cut(s) 511, 1468
BseCI ATCGAT 1 cut(s) 1041
BseDI CCNNGG 3 cut(s) 753, 1048, 1466
BseGI GGATG 4 cut(s) 319, 421, 1058, 1249
BseJI GATNNNNATC 1 cut(s) 1773
BseLI CCNNNNNNNGG 1 cut(s) 1942
BseMI GCAATG 6 cut(s) 232, 847, 1039, 1558, 1729, 1900
BseMII CTCAG 8 cut(s) 30, 1030, 1089, 1103, 1133, 1422, 1578, 1908
BseNI ACTGG 3 cut(s) 196, 1575, 1746
BseRI GAGGAG 5 cut(s) 56, 121, 163, 1802, 1805
BseXI GCAGC 4 cut(s) 67, 599, 1435, 1762
BshFI GGCC 3 cut(s) 74, 752, 866
BshVI ATCGAT 1 cut(s) 1041
BsiHKAI GWGCWC 2 cut(s) 666, 1118
BsiSI CCGG 1 cut(s) 1215
BslFI GGGAC 1 cut(s) 1231
BslI CCNNNNNNNGG 1 cut(s) 1942
BsmAI GTCTC 2 cut(s) 284, 1289
BsmFI GGGAC 1 cut(s) 1231
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 3 cut(s) 74, 752, 866
Bso31I GGTCTC 1 cut(s) 1289
Bsp1286I GDGCHC 2 cut(s) 666, 1118
Bsp1407I TGTACA 1 cut(s) 1555
Bsp143I GATC 3 cut(s) 339, 802, 970
Bsp1720I GCTNAGC 2 cut(s) 1016, 1917
BspACI CCGC 1 cut(s) 863
BspANI GGCC 3 cut(s) 74, 752, 866
BspCNI CTCAG 8 cut(s) 31, 1029, 1090, 1104, 1132, 1423, 1579, 1909
BspDI ATCGAT 1 cut(s) 1041
BspLI GGNNCC 2 cut(s) 1219, 1220
BspPI GGATC 1 cut(s) 347
BspTNI GGTCTC 1 cut(s) 1289
BsrDI GCAATG 6 cut(s) 232, 847, 1039, 1558, 1729, 1900
BsrGI TGTACA 1 cut(s) 1555
BsrI ACTGG 3 cut(s) 196, 1575, 1746
BssECI CCNNGG 3 cut(s) 753, 1048, 1466
BssMI GATC 3 cut(s) 339, 802, 970
BssT1I CCWWGG 1 cut(s) 1048
Bst2UI CCWGG 2 cut(s) 511, 1468
Bst4CI ACNGT 4 cut(s) 437, 492, 961, 1159
Bst6I CTCTTC 2 cut(s) 105, 1361
BstAUI TGTACA 1 cut(s) 1555
BstBAI YACGTR 1 cut(s) 517
BstC8I GCNNGC 6 cut(s) 1375, 1428, 1593, 1755, 1764, 1998
BstDSI CCRYGG 1 cut(s) 753
BstEII GGTNACC 1 cut(s) 1601
BstF5I GGATG 4 cut(s) 319, 421, 1058, 1249
BstKTI GATC 3 cut(s) 342, 805, 973
BstMAI GTCTC 2 cut(s) 284, 1289
BstMBI GATC 3 cut(s) 339, 802, 970
BstMWI GCNNNNNNNGC 6 cut(s) 80, 293, 388, 1588, 1759, 1763
BstNI CCWGG 2 cut(s) 511, 1468
BstNSI RCATGY 1 cut(s) 594
BstPI GGTNACC 1 cut(s) 1601
BstSCI CCNGG 3 cut(s) 509, 1214, 1466
BstV1I GCAGC 4 cut(s) 67, 599, 1435, 1762
BstV2I GAAGAC 1 cut(s) 1049
Bsu15I ATCGAT 1 cut(s) 1041
BsuI GTATCC 1 cut(s) 1182
BsuRI GGCC 3 cut(s) 74, 752, 866
BsuTUI ATCGAT 1 cut(s) 1041
BtgI CCRYGG 1 cut(s) 753
BtsCI GGATG 4 cut(s) 319, 421, 1058, 1249
BtsI GCAGTG 2 cut(s) 204, 1844
BtsIMutI CAGTG 5 cut(s) 204, 442, 798, 1164, 1844
Cac8I GCNNGC 6 cut(s) 1375, 1428, 1593, 1755, 1764, 1998
Cfr13I GGNCC 4 cut(s) 73, 865, 1218, 1313
ClaI ATCGAT 1 cut(s) 1041
Csp6I GTAC 3 cut(s) 48, 957, 1556
CviAII CATG 6 cut(s) 33, 375, 591, 609, 854, 1261
CviQI GTAC 3 cut(s) 48, 957, 1556
DpnI GATC 3 cut(s) 341, 804, 972
DpnII GATC 3 cut(s) 339, 802, 970
Eam1104I CTCTTC 2 cut(s) 105, 1361
EarI CTCTTC 2 cut(s) 105, 1361
Eco130I CCWWGG 1 cut(s) 1048
Eco31I GGTCTC 1 cut(s) 1289
Eco32I GATATC 4 cut(s) 406, 987, 1633, 1804
Eco47I GGWCC 2 cut(s) 1218, 1313
Eco57I CTGAAG 1 cut(s) 198
Eco72I CACGTG 1 cut(s) 517
Eco91I GGTNACC 1 cut(s) 1601
EcoO109I RGGNCCY 1 cut(s) 1218
EcoO65I GGTNACC 1 cut(s) 1601
EcoRII CCWGG 2 cut(s) 509, 1466
EcoRV GATATC 4 cut(s) 406, 987, 1633, 1804
EcoT14I CCWWGG 1 cut(s) 1048
EcoT22I ATGCAT 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 1048
FaeI CATG 6 cut(s) 36, 378, 594, 612, 857, 1264
FalI AAGNNNNNCTT 4 cut(s) 203, 235, 703, 735
FaqI GGGAC 1 cut(s) 1231
FatI CATG 6 cut(s) 32, 374, 590, 608, 853, 1260
FauNDI CATATG 1 cut(s) 1318
Fnu4HI GCNGC 5 cut(s) 81, 613, 864, 1424, 1751
FokI GGATG 4 cut(s) 306, 428, 1065, 1256
Fsp4HI GCNGC 5 cut(s) 81, 613, 864, 1424, 1751
FspBI CTAG 9 cut(s) 297, 659, 1049, 1061, 1308, 1455, 1548, 1719, 1890
GluI GCNGC 5 cut(s) 81, 613, 864, 1424, 1751
HaeIII GGCC 3 cut(s) 74, 752, 866
HapII CCGG 1 cut(s) 1215
Hin1II CATG 6 cut(s) 36, 378, 594, 612, 857, 1264
HincII GTYRAC 3 cut(s) 499, 1543, 1885
HindII GTYRAC 3 cut(s) 499, 1543, 1885
HindIII AAGCTT 1 cut(s) 633
HinfI GANTC 9 cut(s) 602, 693, 950, 1322, 1525, 1544, 1696, 1867, 1886
HpaI GTTAAC 1 cut(s) 499
HpaII CCGG 1 cut(s) 1215
HphI GGTGA 1 cut(s) 597
Hpy166II GTNNAC 7 cut(s) 499, 700, 1313, 1543, 1714, 1885, 1933
Hpy188I TCNGA 5 cut(s) 178, 358, 913, 1113, 1779
Hpy188III TCNNGA 4 cut(s) 990, 1061, 1209, 1241
Hpy8I GTNNAC 7 cut(s) 499, 700, 1313, 1543, 1714, 1885, 1933
HpyAV CCTTC 6 cut(s) 21, 679, 1178, 1612, 1933, 1975
HpyCH4III ACNGT 4 cut(s) 437, 492, 961, 1159
HpyCH4IV ACGT 1 cut(s) 516
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 293, 388, 1588, 1759, 1763
HpySE526I ACGT 1 cut(s) 516
Hsp92II CATG 6 cut(s) 36, 378, 594, 612, 857, 1264
KflI GGGWCCC 1 cut(s) 1218
KspAI GTTAAC 1 cut(s) 499
Kzo9I GATC 3 cut(s) 339, 802, 970
Lsp1109I GCAGC 4 cut(s) 67, 599, 1435, 1762
LweI GCATC 5 cut(s) 148, 220, 406, 1047, 1167
MaeI CTAG 9 cut(s) 297, 659, 1049, 1061, 1308, 1455, 1548, 1719, 1890
MaeII ACGT 1 cut(s) 516
MaeIII GTNAC 3 cut(s) 517, 1153, 1601
MalI GATC 3 cut(s) 341, 804, 972
MboI GATC 3 cut(s) 339, 802, 970
MfeI CAATTG 2 cut(s) 54, 137
MhlI GDGCHC 2 cut(s) 666, 1118
MlyI GAGTC 2 cut(s) 1538, 1880
Mph1103I ATGCAT 1 cut(s) 34
MroXI GAANNNNTTC 3 cut(s) 183, 363, 579
MseI TTAA 6 cut(s) 305, 477, 498, 762, 1233, 1275
MslI CAYNNNNRTG 2 cut(s) 705, 913
MspA1I CMGCKG 1 cut(s) 902
MspI CCGG 1 cut(s) 1215
MspR9I CCNGG 3 cut(s) 511, 1216, 1468
MunI CAATTG 2 cut(s) 54, 137
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 2 cut(s) 511, 1468
MwoI GCNNNNNNNGC 6 cut(s) 80, 293, 388, 1588, 1759, 1763
NciI CCSGG 1 cut(s) 1216
NdeI CATATG 1 cut(s) 1318
NdeII GATC 3 cut(s) 339, 802, 970
NlaIII CATG 6 cut(s) 36, 378, 594, 612, 857, 1264
NlaIV GGNNCC 2 cut(s) 1219, 1220
NmeAIII GCCGAG 1 cut(s) 1738
NmuCI GTSAC 1 cut(s) 517
NsiI ATGCAT 1 cut(s) 34
NspI RCATGY 1 cut(s) 594
PctI GAATGC 1 cut(s) 721
PdmI GAANNNNTTC 3 cut(s) 183, 363, 579
PfeI GAWTC 7 cut(s) 602, 693, 950, 1322, 1525, 1696, 1867
PkrI GCNGC 5 cut(s) 82, 614, 865, 1425, 1752
PleI GAGTC 2 cut(s) 1538, 1880
PmaCI CACGTG 1 cut(s) 517
PmlI CACGTG 1 cut(s) 517
PpsI GAGTC 2 cut(s) 1538, 1880
Ppu21I YACGTR 1 cut(s) 517
PpuMI RGGWCCY 1 cut(s) 1218
Psp5II RGGWCCY 1 cut(s) 1218
Psp6I CCWGG 2 cut(s) 509, 1466
PspCI CACGTG 1 cut(s) 517
PspEI GGTNACC 1 cut(s) 1601
PspGI CCWGG 2 cut(s) 509, 1466
PspN4I GGNNCC 2 cut(s) 1219, 1220
PspPI GGNCC 4 cut(s) 73, 865, 1218, 1313
PspPPI RGGWCCY 1 cut(s) 1218
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 3 cut(s) 49, 958, 1557
RsaNI GTAC 3 cut(s) 48, 957, 1556
RseI CAYNNNNRTG 2 cut(s) 705, 913
SaqAI TTAA 6 cut(s) 305, 477, 498, 762, 1233, 1275
SatI GCNGC 5 cut(s) 81, 613, 864, 1424, 1751
Sau3AI GATC 3 cut(s) 339, 802, 970
Sau96I GGNCC 4 cut(s) 73, 865, 1218, 1313
ScaI AGTACT 1 cut(s) 958
SchI GAGTC 2 cut(s) 1538, 1880
ScrFI CCNGG 3 cut(s) 511, 1216, 1468
SduI GDGCHC 2 cut(s) 666, 1118
SfaNI GCATC 5 cut(s) 148, 220, 406, 1047, 1167
SinI GGWCC 2 cut(s) 1218, 1313
SmiMI CAYNNNNRTG 2 cut(s) 705, 913
SpeI ACTAGT 1 cut(s) 1454
SsiI CCGC 1 cut(s) 863
SspMI CTAG 9 cut(s) 297, 659, 1049, 1061, 1308, 1455, 1548, 1719, 1890
StyD4I CCNGG 3 cut(s) 509, 1214, 1466
StyI CCWWGG 1 cut(s) 1048
TaaI ACNGT 4 cut(s) 437, 492, 961, 1159
TaiI ACGT 1 cut(s) 519
TaqI TCGA 2 cut(s) 342, 1041
TaqII GACCGA 1 cut(s) 776
TatI WGTACW 3 cut(s) 47, 956, 1555
TauI GCSGC 1 cut(s) 866
TfiI GAWTC 7 cut(s) 602, 693, 950, 1322, 1525, 1696, 1867
Tru1I TTAA 6 cut(s) 305, 477, 498, 762, 1233, 1275
Tru9I TTAA 6 cut(s) 305, 477, 498, 762, 1233, 1275
TscAI CASTG 5 cut(s) 211, 442, 805, 1164, 1851
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 4 cut(s) 80, 612, 1423, 1750
Tsp45I GTSAC 1 cut(s) 517
TspRI CASTG 5 cut(s) 211, 442, 805, 1164, 1851
VpaK11BI GGWCC 2 cut(s) 1218, 1313
XapI RAATTY 3 cut(s) 421, 443, 1781
XbaI TCTAGA 1 cut(s) 1060
XceI RCATGY 1 cut(s) 594
XmaJI CCTAGG 1 cut(s) 1048
XmnI GAANNNNTTC 3 cut(s) 183, 363, 579
XspI CTAG 9 cut(s) 297, 659, 1049, 1061, 1308, 1455, 1548, 1719, 1890
ZrmI AGTACT 1 cut(s) 958
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.