Rh5BG369000

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0021375
Physical Location & Seq
Reverse (-)
57893231 .. 57904371
11141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG369000.1

Sequence Viewer

Length: 540 bp
ATGCACTTGCAGCTTGGTGAAGTTTCCACTGTTGTTGTTGTTTCCACACCAAAAGCCACCAAAGAGATTATGAAAACTCATGACAACATCTTCGCTTTCAGGCCACTCCTGCTTGCTCCGGATATCATCTCTTATAGCGGTGCAAGCATTGGCTTTGCACCATATAGAGAATACTGGAGACAAATGTGCAAGATCTGCGGTTTAGTGCTGCTGAACTCGACAAGGGTGGATTCATTTCAATGGATCAGAGAAGAAGAGGTATCTGATTTGCTCGAATTCATTCATGTCAACATTGGATCACCTATCAACCTTGGGGAGCAGATTTTTTCAATGACATATGGAATGACGGTCATAGTGGCTTTTGATAACAAGTGCAAAGAACACGAAGCACTCATAATAGCTGTCAGGGAAGGTGCAGAGGCAACAGGGGGTGAAGCAGAGTCTGGGACGCAGAGACAGTTTGAGCTTTGCTGGTTGGAAGATGGGTTCTCAGATATGATTTTTGGGTGTGAGAACTCTAGCTGGAGAACAAGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00590 ko00591 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 map00140 map00590 map00591 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

179

Amino Acids

20.13

Weight (kDa)

4.9

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 9 - 126 1.4e-07 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021375)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487451 RchiOBHm_Chr5g0029101 RchiOBHm_Chr7g0228241
rosa_laevigata RLG00000027662
rosa_samantha Rh5BG369000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 2 cut(s) 138, 198
AclWI GGATC 2 cut(s) 251, 304
AcsI RAATTY 1 cut(s) 275
AgsI TTSAA 2 cut(s) 239, 330
AloI GAACNNNNNNTCC 2 cut(s) 470, 502
AluBI AGCT 4 cut(s) 13, 401, 466, 522
AluI AGCT 4 cut(s) 13, 401, 466, 522
Alw26I GTCTC 2 cut(s) 172, 448
AlwI GGATC 2 cut(s) 251, 304
AlwNI CAGNNNCTG 1 cut(s) 443
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 2 cut(s) 10, 208
ApoI RAATTY 1 cut(s) 275
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
Asp700I GAANNNNTTC 1 cut(s) 279
AsuHPI GGTGA 3 cut(s) 29, 291, 443
BbvI GCAGC 2 cut(s) 22, 195
BccI CCATC 1 cut(s) 476
BcoDI GTCTC 2 cut(s) 172, 448
BfaI CTAG 1 cut(s) 519
BglII AGATCT 1 cut(s) 192
BisI GCNGC 2 cut(s) 11, 209
BlsI GCNGC 2 cut(s) 12, 210
BpmI CTGGAG 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 179
BseAI TCCGGA 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 1 cut(s) 179
BseXI GCAGC 2 cut(s) 22, 195
BsgI GTGCAG 1 cut(s) 435
BshFI GGCC 1 cut(s) 103
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 460
BsmAI GTCTC 2 cut(s) 172, 448
BsmFI GGGAC 1 cut(s) 460
BsnI GGCC 1 cut(s) 103
Bsp13I TCCGGA 1 cut(s) 118
Bsp143I GATC 3 cut(s) 192, 243, 296
BspACI CCGC 2 cut(s) 138, 198
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 503
BspEI TCCGGA 1 cut(s) 118
BspHI TCATGA 1 cut(s) 79
BspPI GGATC 2 cut(s) 251, 304
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 3 cut(s) 192, 243, 296
BssT1I CCWWGG 1 cut(s) 310
Bst4CI ACNGT 3 cut(s) 31, 349, 459
Bst6I CTCTTC 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 195
BstC8I GCNNGC 2 cut(s) 114, 145
BstDEI CTNAG 1 cut(s) 490
BstKTI GATC 3 cut(s) 195, 246, 299
BstMAI GTCTC 2 cut(s) 172, 448
BstMBI GATC 3 cut(s) 192, 243, 296
BstMWI GCNNNNNNNGC 4 cut(s) 10, 109, 144, 195
BstV1I GCAGC 2 cut(s) 22, 195
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 2 cut(s) 114, 145
CaiI CAGNNNCTG 1 cut(s) 443
CciI TCATGA 1 cut(s) 79
CseI GACGC 1 cut(s) 457
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 2 cut(s) 80, 284
CviJI RGCY 8 cut(s) 13, 56, 103, 153, 359, 401, 466, 522
CviKI_1 RGCY 8 cut(s) 13, 56, 103, 153, 359, 401, 466, 522
DdeI CTNAG 1 cut(s) 490
DpnI GATC 3 cut(s) 194, 245, 298
DpnII GATC 3 cut(s) 192, 243, 296
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 310
Eco32I GATATC 1 cut(s) 124
EcoRI GAATTC 1 cut(s) 275
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 2 cut(s) 83, 287
FaqI GGGAC 1 cut(s) 460
FatI CATG 2 cut(s) 79, 283
FauNDI CATATG 1 cut(s) 337
Fnu4HI GCNGC 2 cut(s) 11, 209
Fsp4HI GCNGC 2 cut(s) 11, 209
FspBI CTAG 1 cut(s) 519
GluI GCNGC 2 cut(s) 11, 209
GsuI CTGGAG 1 cut(s) 196
HaeIII GGCC 1 cut(s) 103
HapII CCGG 1 cut(s) 119
HgaI GACGC 1 cut(s) 457
Hin1II CATG 2 cut(s) 83, 287
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 2 cut(s) 230, 440
HpaII CCGG 1 cut(s) 119
HphI GGTGA 3 cut(s) 29, 291, 443
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 3 cut(s) 248, 265, 493
Hpy188III TCNNGA 2 cut(s) 80, 119
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 3 cut(s) 31, 349, 459
HpyCH4V TGCA 7 cut(s) 4, 10, 143, 158, 189, 375, 416
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 109, 144, 195
HpyF3I CTNAG 1 cut(s) 490
Hsp92II CATG 2 cut(s) 83, 287
Kpn2I TCCGGA 1 cut(s) 118
Kzo9I GATC 3 cut(s) 192, 243, 296
LmnI GCTCC 2 cut(s) 121, 316
LpnPI CCDG 9 cut(s) 85, 122, 132, 160, 391, 411, 429, 457, 508
Lsp1109I GCAGC 2 cut(s) 22, 195
MaeI CTAG 1 cut(s) 519
MalI GATC 3 cut(s) 194, 245, 298
MboI GATC 3 cut(s) 192, 243, 296
MboII GAAGA 4 cut(s) 82, 263, 266, 491
MflI RGATCY 1 cut(s) 192
MluCI AATT 1 cut(s) 275
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 456
MnlI CCTC 3 cut(s) 250, 412, 527
MroI TCCGGA 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 238
MspI CCGG 1 cut(s) 119
MwoI GCNNNNNNNGC 4 cut(s) 10, 109, 144, 195
NdeI CATATG 1 cut(s) 337
NdeII GATC 3 cut(s) 192, 243, 296
NlaIII CATG 2 cut(s) 83, 287
PagI TCATGA 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 12, 210
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
PstNI CAGNNNCTG 1 cut(s) 443
PsuI RGATCY 1 cut(s) 192
RseI CAYNNNNRTG 1 cut(s) 238
SatI GCNGC 2 cut(s) 11, 209
Sau3AI GATC 3 cut(s) 192, 243, 296
SchI GAGTC 1 cut(s) 449
SetI ASST 8 cut(s) 15, 261, 304, 312, 403, 415, 468, 524
SmiMI CAYNNNNRTG 1 cut(s) 238
Sse9I AATT 1 cut(s) 275
SsiI CCGC 2 cut(s) 138, 198
SspMI CTAG 1 cut(s) 519
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 3 cut(s) 31, 349, 459
TaqI TCGA 2 cut(s) 218, 273
TasI AATT 1 cut(s) 275
TfiI GAWTC 1 cut(s) 230
TscAI CASTG 1 cut(s) 34
TseI GCWGC 2 cut(s) 10, 208
TspDTI ATGAA 4 cut(s) 86, 222, 268, 272
TspRI CASTG 1 cut(s) 34
XapI RAATTY 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.