Rh5BG376000

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0030180
Physical Location & Seq
Reverse (-)
59459015 .. 59461926
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG376000.1

Sequence Viewer

Length: 384 bp
ATGGTCTCCATGTACTGCAATTGCTTACACGCCAATAAGCCCGAGTTTGTTGCCTGTAGGGTCGACGCTATTGGCTACCAGGTCGGCCACCAGCTCTCCGACAGTGGAGCGGCCTGGTTTACTGAACATCTCGATGCAATTAAGTTCATCTGCAAGCATTTCCGGTCTGAACTTTTCAAGAAGCAGATAGACAACTTGAAGACCAATCATAAGGCATGTAAGGGCTTGGTTCTGAGTGATGTATTTGATGTTATAATAGATACTGGGGGAAAACTTCTCAGACATACTAAACTTGTCCCCAAGTGGATAAATGGGGCGATTATGGTGAGATCTAATGTAGATCCAACTTTCTATTCACTCGCGGGATCCAGGCGGTCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

127

Amino Acids

14.3

Weight (kDa)

9.2

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 2 - 81 1.9e-12 Transport protein particle (TRAPP) component
DUF2647 PF10839 93 - 126 3.5e-08 Protein of unknown function (DUF2647)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0030180)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0055661
rosa_samantha Rh5BG376000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 254
AccBSI CCGCTC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 63
AccII CGCG 1 cut(s) 362
AciI CCGC 3 cut(s) 110, 362, 373
AclWI GGATC 3 cut(s) 335, 360, 373
AcoI YGGCCR 1 cut(s) 85
AfaI GTAC 1 cut(s) 14
AgsI TTSAA 2 cut(s) 178, 199
AjnI CCWGG 3 cut(s) 78, 113, 368
AjuI GAANNNNNNNTTGG 2 cut(s) 337, 369
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 10
AlwI GGATC 3 cut(s) 335, 360, 373
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 2 cut(s) 85, 111
AspS9I GGNCC 1 cut(s) 375
AsuHPI GGTGA 1 cut(s) 337
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 1 cut(s) 375
BamHI GGATCC 1 cut(s) 365
BbsI GAAGAC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BciT130I CCWGG 3 cut(s) 80, 115, 370
BcoDI GTCTC 1 cut(s) 10
BfmI CTRYAG 1 cut(s) 55
BglII AGATCT 1 cut(s) 329
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 3 cut(s) 80, 115, 370
Bme18I GGWCC 1 cut(s) 375
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 375
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 3 cut(s) 80, 115, 370
BmrI ACTGGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 124
BmuI ACTGGG 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bse1I ACTGG 1 cut(s) 268
BseBI CCWGG 3 cut(s) 80, 115, 370
BseMII CTCAG 2 cut(s) 224, 292
BseNI ACTGG 1 cut(s) 268
Bsh1236I CGCG 1 cut(s) 362
BshFI GGCC 2 cut(s) 87, 113
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 163
BslFI GGGAC 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 10
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 2 cut(s) 87, 113
Bso31I GGTCTC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 41
Bsp143I GATC 3 cut(s) 329, 340, 365
BspACI CCGC 3 cut(s) 110, 362, 373
BspANI GGCC 2 cut(s) 87, 113
BspCNI CTCAG 2 cut(s) 225, 291
BspFNI CGCG 1 cut(s) 362
BspLI GGNNCC 1 cut(s) 367
BspPI GGATC 3 cut(s) 335, 360, 373
BspTNI GGTCTC 1 cut(s) 10
BsrBI CCGCTC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 268
BssMI GATC 3 cut(s) 329, 340, 365
Bst2UI CCWGG 3 cut(s) 80, 115, 370
Bst4CI ACNGT 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 2 cut(s) 233, 278
BstFNI CGCG 1 cut(s) 362
BstKTI GATC 3 cut(s) 332, 343, 368
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 3 cut(s) 329, 340, 365
BstNI CCWGG 3 cut(s) 80, 115, 370
BstNSI RCATGY 1 cut(s) 219
BstSCI CCNGG 3 cut(s) 78, 113, 368
BstSFI CTRYAG 1 cut(s) 55
BstUI CGCG 1 cut(s) 362
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 3 cut(s) 329, 340, 365
BstYI RGATCY 3 cut(s) 329, 340, 365
BsuRI GGCC 2 cut(s) 87, 113
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 375
CseI GACGC 1 cut(s) 74
CsiI ACCWGGT 1 cut(s) 78
Csp6I GTAC 1 cut(s) 13
CviAII CATG 2 cut(s) 10, 216
CviJI RGCY 6 cut(s) 40, 75, 87, 94, 113, 225
CviKI_1 RGCY 6 cut(s) 40, 75, 87, 94, 113, 225
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 2 cut(s) 233, 278
DpnI GATC 3 cut(s) 331, 342, 367
DpnII GATC 3 cut(s) 329, 340, 365
EaeI YGGCCR 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 375
Eco88I CYCGRG 1 cut(s) 41
EcoRII CCWGG 3 cut(s) 78, 113, 368
FaeI CATG 2 cut(s) 13, 219
FaiI YATR 6 cut(s) 11, 210, 217, 254, 285, 323
FaqI GGGAC 1 cut(s) 281
FatI CATG 2 cut(s) 9, 215
FauI CCCGC 1 cut(s) 355
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 2 cut(s) 87, 113
HapII CCGG 1 cut(s) 163
HgaI GACGC 1 cut(s) 74
Hin1II CATG 2 cut(s) 13, 219
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HpaII CCGG 1 cut(s) 163
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 2 cut(s) 64, 120
Hpy188I TCNGA 4 cut(s) 100, 169, 234, 281
Hpy188III TCNNGA 2 cut(s) 131, 178
Hpy8I GTNNAC 2 cut(s) 64, 120
Hpy99I CGWCG 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 18, 137, 153
HpyF3I CTNAG 2 cut(s) 233, 278
Hsp92II CATG 2 cut(s) 13, 219
Kzo9I GATC 3 cut(s) 329, 340, 365
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 9 cut(s) 65, 67, 92, 100, 104, 127, 176, 249, 355
LweI GCATC 1 cut(s) 124
MabI ACCWGGT 1 cut(s) 78
MalI GATC 3 cut(s) 331, 342, 367
MbiI CCGCTC 1 cut(s) 110
MboI GATC 3 cut(s) 329, 340, 365
MboII GAAGA 1 cut(s) 211
MfeI CAATTG 1 cut(s) 19
MflI RGATCY 3 cut(s) 329, 340, 365
MluCI AATT 2 cut(s) 19, 138
MmeI TCCRAC 2 cut(s) 123, 368
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 3 cut(s) 80, 115, 370
MunI CAATTG 1 cut(s) 19
MvaI CCWGG 3 cut(s) 80, 115, 370
MvnI CGCG 1 cut(s) 362
NdeII GATC 3 cut(s) 329, 340, 365
NlaIII CATG 2 cut(s) 13, 219
NlaIV GGNNCC 1 cut(s) 367
NspI RCATGY 1 cut(s) 219
PkrI GCNGC 1 cut(s) 112
PsiI TTATAA 1 cut(s) 254
Psp6I CCWGG 3 cut(s) 78, 113, 368
PspGI CCWGG 3 cut(s) 78, 113, 368
PspN4I GGNNCC 1 cut(s) 367
PspPI GGNCC 1 cut(s) 375
PsuI RGATCY 3 cut(s) 329, 340, 365
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
RseI CAYNNNNRTG 1 cut(s) 132
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 3 cut(s) 329, 340, 365
Sau96I GGNCC 1 cut(s) 375
ScrFI CCNGG 3 cut(s) 80, 115, 370
SetI ASST 2 cut(s) 84, 96
SexAI ACCWGGT 1 cut(s) 78
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 1 cut(s) 55
SinI GGWCC 1 cut(s) 375
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 2 cut(s) 19, 138
SsiI CCGC 3 cut(s) 110, 362, 373
StyD4I CCNGG 3 cut(s) 78, 113, 368
TaaI ACNGT 1 cut(s) 104
TaqI TCGA 2 cut(s) 63, 132
TasI AATT 2 cut(s) 19, 138
TatI WGTACW 1 cut(s) 12
TauI GCSGC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 136
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 375
XceI RCATGY 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.