Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0025030

Physical Location & Seq

Genomic Coordinates Forward (+)

78586607 .. 78592530

Gene Structure 5924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG493200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAATGACCACAATACCATTGAGGAGAGCAAAGGTGGAGACTCCACCCCGGCTAAGTACCTTCAAAAGCTCAGAGATATACAAGGCTTTCCCGACAACAATTTCAAGAACTTACCGACTGGTGAAGTTGTTGACAAGCTACTGAAGCTAGCTGGCTTCACCTTTTCTGCTACAACAGATACTAATGGTGTCTTTGAGGCTTGCCTTCCCCATGGAGATTATGAAGTGAAAATCACTGATCTGGAATCTGTGAAAGTTTCTACCGGTATGGTTCAGGGATTGAGTGTGGCAGCAAGTTCCACTGCATACCAACAACCATTGCTGGTCCAACCTGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

113

Amino Acids

12.13

Weight (kDa)

4.8

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025030)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0072241
rosa_samantha	Rh5BG493200 Rh5CG517200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	59
AgeI	ACCGGT	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	65, 106
AluBI	AGCT	4 cut(s)	70, 139, 148, 152
AluI	AGCT	4 cut(s)	70, 139, 148, 152
Alw26I	GTCTC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	290, 335
AsiGI	ACCGGT	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	134, 151
AsuNHI	GCTAGC	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	302, 322
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	149
BisI	GCNGC	2 cut(s)	291, 336
BlsI	GCNGC	2 cut(s)	292, 337
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	50
BmtI	GCTAGC	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	48, 211
BsaWI	WCCGGW	1 cut(s)	263
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	48, 211
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	302, 322
BshTI	ACCGGT	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	50, 264
BsmAI	GTCTC	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	238
Bsp19I	CCATGG	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	84
BspOI	GCTAGC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	48, 211
BssMI	GATC	1 cut(s)	238
BssT1I	CCWWGG	1 cut(s)	211
BstC8I	GCNNGC	3 cut(s)	150, 154, 202
BstDEI	CTNAG	2 cut(s)	54, 71
BstDSI	CCRYGG	1 cut(s)	211
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	302, 322
BtgI	CCRYGG	1 cut(s)	211
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	234, 300
Cac8I	GCNNGC	3 cut(s)	150, 154, 202
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	58
CspAI	ACCGGT	1 cut(s)	263
CviAII	CATG	2 cut(s)	212, 339
CviJI	RGCY	8 cut(s)	53, 70, 87, 139, 148, 152, 156, 200
CviKI_1	RGCY	8 cut(s)	53, 70, 87, 139, 148, 152, 156, 200
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	2 cut(s)	54, 71
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	2 cut(s)	215, 342
FaiI	YATR	6 cut(s)	80, 213, 222, 269, 307, 340
FatI	CATG	2 cut(s)	211, 338
Fnu4HI	GCNGC	2 cut(s)	291, 336
Fsp4HI	GCNGC	2 cut(s)	291, 336
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	2 cut(s)	291, 336
HapII	CCGG	2 cut(s)	50, 264
Hin1II	CATG	2 cut(s)	215, 342
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	41, 245
HpaII	CCGG	2 cut(s)	50, 264
HphI	GGTGA	2 cut(s)	134, 151
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	3 cut(s)	92, 106, 242
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	71, 215
HpyCH4V	TGCA	2 cut(s)	305, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	54, 71
Hsp92II	CATG	2 cut(s)	215, 342
Kzo9I	GATC	1 cut(s)	238
LpnPI	CCDG	7 cut(s)	63, 105, 138, 227, 260, 277, 308
Lsp1109I	GCAGC	2 cut(s)	302, 322
MaeI	CTAG	1 cut(s)	149
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MluCI	AATT	1 cut(s)	100
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	2 cut(s)	16, 190
MspI	CCGG	2 cut(s)	50, 264
MspR9I	CCNGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	50
NcoI	CCATGG	1 cut(s)	211
NdeII	GATC	1 cut(s)	238
NheI	GCTAGC	1 cut(s)	148
NlaIII	CATG	2 cut(s)	215, 342
PfeI	GAWTC	1 cut(s)	245
PinAI	ACCGGT	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	292, 337
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	325
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SatI	GCNGC	2 cut(s)	291, 336
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	8 cut(s)	37, 63, 72, 141, 150, 154, 164, 334
SinI	GGWCC	1 cut(s)	325
Sse9I	AATT	1 cut(s)	100
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	211
TasI	AATT	1 cut(s)	100
TfiI	GAWTC	1 cut(s)	245
TscAI	CASTG	2 cut(s)	241, 307
TseI	GCWGC	2 cut(s)	290, 335
TspDTI	ATGAA	2 cut(s)	17, 237
TspRI	CASTG	2 cut(s)	241, 307
VpaK11BI	GGWCC	1 cut(s)	325
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.