Rh5BG551000

Metal tolerance protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
87565383 .. 87581481
16099 bp
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UTR
Exon/CDS
Intron
Rh5BG551000.1

Sequence Viewer

Length: 243 bp
ATGGAGGACAAGTCGGATTCGGGTCTGAAGGCGTCGCTGTTGGGAAACGGTGGACTTACTCGGCGACTGAGTCGTAAAAACTCGTACAGCACTCTCATAAACGACTTCATTTCGAGGCTGCCACCGGAAGTCCGAGCTGGTCTTGACCCCGATTCGCCGGAAGTGATCGACTGCTCGCGCGCCTCGGGATTAAGTGAAGGTCCAGAGACAAATGATTTTGGAAATATGTATAATGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

8.69

Weight (kDa)

4.6

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021414)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0081251
rosa_samantha Rh5AG526800 Rh5BG551000 Rh5CG573900
rosa_wichuraiana Rw5G048970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 178, 180
AcuI CTGAAG 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 1 cut(s) 86
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 200
Ama87I CYCGRG 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 118
AspLEI GCGC 2 cut(s) 180, 182
AspS9I GGNCC 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 184
AvaII GGWCC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 200
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 59
BsePI GCGCGC 1 cut(s) 178
BseXI GCAGC 1 cut(s) 105
Bsh1236I CGCG 2 cut(s) 178, 180
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 2 cut(s) 125, 158
BsmAI GTCTC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 184
Bsp143I GATC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 60
BspFNI CGCG 2 cut(s) 178, 180
BssECI CCNNGG 1 cut(s) 183
BssHII GCGCGC 1 cut(s) 178
BssMI GATC 1 cut(s) 165
BssNI GRCGYC 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 176, 180
BstDEI CTNAG 1 cut(s) 68
BstFNI CGCG 2 cut(s) 178, 180
BstHHI GCGC 2 cut(s) 180, 182
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 1 cut(s) 165
BstUI CGCG 2 cut(s) 178, 180
BstV1I GCAGC 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 176, 180
CfoI GCGC 2 cut(s) 180, 182
Cfr13I GGNCC 1 cut(s) 200
CseI GACGC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 85
CviJI RGCY 2 cut(s) 118, 137
CviKI_1 RGCY 2 cut(s) 118, 137
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 68
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 184
FaiI YATR 3 cut(s) 98, 227, 231
Fnu4HI GCNGC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 119
GlaI GCGC 2 cut(s) 179, 181
GluI GCNGC 1 cut(s) 119
HapII CCGG 2 cut(s) 125, 158
HgaI GACGC 1 cut(s) 21
HhaI GCGC 2 cut(s) 180, 182
Hin1I GRCGYC 1 cut(s) 32
Hin6I GCGC 2 cut(s) 178, 180
HinP1I GCGC 2 cut(s) 178, 180
HinfI GANTC 3 cut(s) 17, 70, 152
HpaII CCGG 2 cut(s) 125, 158
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 3 cut(s) 16, 27, 134
Hpy188III TCNNGA 3 cut(s) 143, 186, 203
Hpy8I GTNNAC 1 cut(s) 53
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 22, 191
HpyCH4III ACNGT 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 32
HspAI GCGC 2 cut(s) 178, 180
Kzo9I GATC 1 cut(s) 165
LpnPI CCDG 4 cut(s) 123, 138, 171, 216
Lsp1109I GCAGC 1 cut(s) 105
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 2 cut(s) 108, 193
MseI TTAA 1 cut(s) 191
MspI CCGG 2 cut(s) 125, 158
MvnI CGCG 2 cut(s) 178, 180
NdeII GATC 1 cut(s) 165
NmeAIII GCCGAG 1 cut(s) 40
PauI GCGCGC 1 cut(s) 178
PfeI GAWTC 2 cut(s) 17, 152
PflFI GACNNNGTC 1 cut(s) 69
PkrI GCNGC 1 cut(s) 120
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 200
PsyI GACNNNGTC 1 cut(s) 69
PteI GCGCGC 1 cut(s) 178
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 79
SetI ASST 2 cut(s) 139, 202
SinI GGWCC 1 cut(s) 200
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 2 cut(s) 113, 168
TfiI GAWTC 2 cut(s) 17, 152
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TseI GCWGC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 97
Tth111I GACNNNGTC 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.