Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0025023

Physical Location & Seq

Genomic Coordinates Forward (+)

748647 .. 749387

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG011800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTCAGAAGGAGAAGACGGAGGACTCTGGAGCTAGCCATATGCAGGTGTTTATACCCTCTTCGGCGCCATTGTCATTGTTCATGCTCTACAATTCGCCTGTTGCAGGTAACAAAGACATTGCAGAAGAGTCGATTAAGAATTTCCTGATTTCATATGCTACATTGTTGCCCAAAAACTTGCATAATCACTGCGCACCGATAGTGTTAGAGTTCTGTAAGTTTCTGAGAAGAGTAGGGCAGGAGGACCCTCCGTACATCTTGTGCAGGAGCGCTCTAGGTTTGTTTTGGGAGAATGCTGGGGGTTTGCAGGACTCAGAGTGTGTTGATCAGTTGGTTAGGTTGAAGGAGATTTACCCGTTTCTCACTGAGGTGGCAAATAGTTTGTCTAAGGATTTGGAGCTGAGTATGGAGTCGCCTGGGAGTCTTAGGCCGTTGTTGGATGATGTGGTTGATTTTAAGGCATTCTTGCTCCCCATGCGTACTGCAATTAACAAAGAATTGTACTATACAGGTCCCATTTGTGAATCCTCGAAAGCACAGGCTGCTAAGTACCCGGTGTTTGGGGAAGAGATTGAGCTTCTTCGTATTATACTTGCTGATTTGCTGAAAAGAATGGCTGAGTGCCTTACCAAAGTGGTAGAGTGCTTGGCTGGGAAAGGAAAGGGGGACAGTGATTATTGTTCATTCTGGATGTTCTCAGTATCTTGCTGTTTTGAAGGAACTACATGGGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009636 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04011 ko04120 ko04144 ko04530 ko05169 map04011 map04120 map04144 map04530 map05169

Pfam Domains

Protein Families

HECT ubiquitin

Protein Analysis

246

Amino Acids

27.52

Weight (kDa)

4.95

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025023)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0001401
rosa_samantha	Rh5AG010800 Rh5CG011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
Acc16I	TGCGCA	1 cut(s)	196
Acc36I	ACCTGC	2 cut(s)	37, 98
AccB1I	GGYRCC	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	4 cut(s)	257, 484, 506, 554
AfeI	AGCGCT	1 cut(s)	274
AfiI	CCNNNNNNNGG	3 cut(s)	46, 107, 563
AgsI	TTSAA	2 cut(s)	346, 719
AjnI	CCWGG	1 cut(s)	418
AleI	CACNNNNGTG	1 cut(s)	371
AluBI	AGCT	3 cut(s)	35, 403, 580
AluI	AGCT	3 cut(s)	35, 403, 580
Aor51HI	AGCGCT	1 cut(s)	274
AoxI	GGCC	1 cut(s)	431
ApeKI	GCWGC	1 cut(s)	545
ApoI	RAATTY	1 cut(s)	142
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
AspLEI	GCGC	3 cut(s)	70, 197, 275
AspS9I	GGNCC	2 cut(s)	247, 515
AsuC2I	CCSGG	1 cut(s)	557
AsuNHI	GCTAGC	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	247, 515
BanI	GGYRCC	1 cut(s)	67
BarI	GAAGNNNNNNTAC	2 cut(s)	338, 370
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	532
BceAI	ACGGC	1 cut(s)	418
BcgI	CGANNNNNNTGC	2 cut(s)	114, 148
BciT130I	CCWGG	1 cut(s)	420
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	557
BfaI	CTAG	2 cut(s)	36, 278
BfoI	RGCGCY	2 cut(s)	71, 276
BfuAI	ACCTGC	2 cut(s)	37, 98
BisI	GCNGC	1 cut(s)	546
BlsI	GCNGC	1 cut(s)	547
Bme1390I	CCNGG	2 cut(s)	420, 557
Bme18I	GGWCC	2 cut(s)	247, 515
BmgT120I	GGNCC	2 cut(s)	247, 515
BmiI	GGNNCC	3 cut(s)	69, 249, 517
BmrFI	CCNGG	2 cut(s)	420, 557
BmtI	GCTAGC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	557
BsaHI	GRCGYC	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 107, 563
Bse3DI	GCAATG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	419
BseGI	GGATG	2 cut(s)	448, 699
BseLI	CCNNNNNNNGG	3 cut(s)	46, 107, 563
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	7 cut(s)	20, 218, 330, 360, 395, 612, 714
BseXI	GCAGC	1 cut(s)	532
BseYI	CCCAGC	2 cut(s)	299, 653
BsgI	GTGCAG	1 cut(s)	286
BshFI	GGCC	1 cut(s)	433
BshNI	GGYRCC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	557
BslFI	GGGAC	2 cut(s)	501, 683
BslI	CCNNNNNNNGG	3 cut(s)	46, 107, 563
BsmFI	GGGAC	2 cut(s)	501, 683
BsmI	GAATGC	2 cut(s)	301, 464
BsnI	GGCC	1 cut(s)	433
Bsp143I	GATC	1 cut(s)	328
BspANI	GGCC	1 cut(s)	433
BspCNI	CTCAG	7 cut(s)	19, 219, 329, 361, 396, 613, 713
BspLI	GGNNCC	3 cut(s)	69, 249, 517
BspMI	ACCTGC	2 cut(s)	37, 98
BspOI	GCTAGC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	674
Bst6I	CTCTTC	4 cut(s)	67, 123, 226, 564
BstACI	GRCGYC	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	37
BstENI	CCTNNNNNAGG	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	448, 699
BstH2I	RGCGCY	2 cut(s)	71, 276
BstHHI	GCGC	3 cut(s)	70, 197, 275
BstKTI	GATC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	2 cut(s)	478, 545
BstNI	CCWGG	1 cut(s)	420
BstSCI	CCNGG	2 cut(s)	418, 555
BstV1I	GCAGC	1 cut(s)	532
BstV2I	GAAGAC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	448, 699
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	3 cut(s)	190, 366, 679
BveI	ACCTGC	2 cut(s)	37, 98
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	3 cut(s)	70, 197, 275
Cfr13I	GGNCC	2 cut(s)	247, 515
Csp6I	GTAC	4 cut(s)	256, 483, 505, 553
CviAII	CATG	3 cut(s)	85, 478, 729
CviJI	RGCY	9 cut(s)	5, 35, 39, 403, 433, 545, 580, 620, 653
CviKI_1	RGCY	9 cut(s)	5, 35, 39, 403, 433, 545, 580, 620, 653
CviQI	GTAC	4 cut(s)	256, 483, 505, 553
DinI	GGCGCC	1 cut(s)	69
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eam1104I	CTCTTC	4 cut(s)	67, 123, 226, 564
EarI	CTCTTC	4 cut(s)	67, 123, 226, 564
Eco47I	GGWCC	2 cut(s)	247, 515
Eco47III	AGCGCT	1 cut(s)	274
EcoNI	CCTNNNNNAGG	1 cut(s)	105
EcoO109I	RGGNCCY	2 cut(s)	247, 515
EcoRII	CCWGG	1 cut(s)	418
EgeI	GGCGCC	1 cut(s)	69
EheI	GGCGCC	1 cut(s)	69
FaeI	CATG	3 cut(s)	88, 481, 732
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FaqI	GGGAC	2 cut(s)	501, 683
FatI	CATG	3 cut(s)	84, 477, 728
FauNDI	CATATG	2 cut(s)	42, 157
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	1 cut(s)	546
FokI	GGATG	2 cut(s)	455, 706
Fsp4HI	GCNGC	1 cut(s)	546
FspBI	CTAG	2 cut(s)	36, 278
FspI	TGCGCA	1 cut(s)	196
GlaI	GCGC	3 cut(s)	69, 196, 274
GluI	GCNGC	1 cut(s)	546
GsaI	CCCAGC	2 cut(s)	303, 657
GsuI	CTGGAG	1 cut(s)	51
HaeII	RGCGCY	2 cut(s)	71, 276
HaeIII	GGCC	1 cut(s)	433
HapII	CCGG	1 cut(s)	557
HhaI	GCGC	3 cut(s)	70, 197, 275
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	88, 481, 732
Hin6I	GCGC	3 cut(s)	68, 195, 273
HinP1I	GCGC	3 cut(s)	68, 195, 273
HinfI	GANTC	6 cut(s)	26, 131, 314, 413, 424, 527
HpaII	CCGG	1 cut(s)	557
Hpy188I	TCNGA	3 cut(s)	9, 228, 319
Hpy188III	TCNNGA	3 cut(s)	30, 148, 691
HpyAV	CCTTC	3 cut(s)	4, 340, 713
HpyCH4III	ACNGT	1 cut(s)	674
HpyCH4V	TGCA	7 cut(s)	46, 107, 125, 184, 267, 310, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	478, 545
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	88, 481, 732
HspAI	GCGC	3 cut(s)	68, 195, 273
KasI	GGCGCC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	4 cut(s)	32, 270, 400, 477
Lsp1109I	GCAGC	1 cut(s)	532
MaeI	CTAG	2 cut(s)	36, 278
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	6 cut(s)	28, 54, 140, 243, 575, 581
MluCI	AATT	4 cut(s)	94, 142, 489, 500
Mly113I	GGCGCC	1 cut(s)	68
MlyI	GAGTC	5 cut(s)	20, 140, 308, 422, 433
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	6 cut(s)	16, 70, 238, 261, 364, 541
MseI	TTAA	3 cut(s)	138, 459, 492
MslI	CAYNNNNRTG	1 cut(s)	371
MspI	CCGG	1 cut(s)	557
MspR9I	CCNGG	2 cut(s)	420, 557
Mva1269I	GAATGC	2 cut(s)	301, 464
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	2 cut(s)	478, 545
NarI	GGCGCC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	557
NdeI	CATATG	2 cut(s)	42, 157
NdeII	GATC	1 cut(s)	328
NheI	GCTAGC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	88, 481, 732
NlaIV	GGNNCC	3 cut(s)	69, 249, 517
NsbI	TGCGCA	1 cut(s)	196
OliI	CACNNNNGTG	1 cut(s)	371
PaqCI	CACCTGC	1 cut(s)	37
PctI	GAATGC	2 cut(s)	301, 464
PfeI	GAWTC	1 cut(s)	527
PkrI	GCNGC	1 cut(s)	547
PleI	GAGTC	5 cut(s)	20, 139, 308, 421, 432
PluTI	GGCGCC	1 cut(s)	71
PpsI	GAGTC	5 cut(s)	20, 139, 308, 421, 432
PpuMI	RGGWCCY	2 cut(s)	247, 515
Psp5II	RGGWCCY	2 cut(s)	247, 515
Psp6I	CCWGG	1 cut(s)	418
PspFI	CCCAGC	2 cut(s)	299, 653
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	3 cut(s)	69, 249, 517
PspPI	GGNCC	2 cut(s)	247, 515
PspPPI	RGGWCCY	2 cut(s)	247, 515
RsaI	GTAC	4 cut(s)	257, 484, 506, 554
RsaNI	GTAC	4 cut(s)	256, 483, 505, 553
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	3 cut(s)	138, 459, 492
SatI	GCNGC	1 cut(s)	546
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	2 cut(s)	247, 515
SchI	GAGTC	5 cut(s)	20, 140, 308, 422, 433
ScrFI	CCNGG	2 cut(s)	420, 557
SetI	ASST	9 cut(s)	37, 51, 112, 283, 344, 375, 405, 517, 582
SfoI	GGCGCC	1 cut(s)	69
SinI	GGWCC	2 cut(s)	247, 515
SmiMI	CAYNNNNRTG	1 cut(s)	371
Sse9I	AATT	4 cut(s)	94, 142, 489, 500
SspDI	GGCGCC	1 cut(s)	67
SspMI	CTAG	2 cut(s)	36, 278
StyD4I	CCNGG	2 cut(s)	418, 555
TaaI	ACNGT	1 cut(s)	674
TaqI	TCGA	2 cut(s)	134, 533
TasI	AATT	4 cut(s)	94, 142, 489, 500
TatI	WGTACW	1 cut(s)	504
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	3 cut(s)	138, 459, 492
Tru9I	TTAA	3 cut(s)	138, 459, 492
TscAI	CASTG	3 cut(s)	197, 373, 679
TseI	GCWGC	1 cut(s)	545
TspDTI	ATGAA	3 cut(s)	73, 144, 675
TspGWI	ACGGA	2 cut(s)	35, 243
TspRI	CASTG	3 cut(s)	197, 373, 679
VpaK11BI	GGWCC	2 cut(s)	247, 515
XagI	CCTNNNNNAGG	1 cut(s)	105
XapI	RAATTY	1 cut(s)	142
XspI	CTAG	2 cut(s)	36, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.