Rh5CG136800

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0030242
Physical Location & Seq
Reverse (-)
11454860 .. 11455108
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG136800.1

Sequence Viewer

Length: 249 bp
ATGGATGAGATTGATGTCATTGGTGGAGCAAGATTGAGTGAAGGTTGTAGCACGGACCATGAACTTCAGAGAATCCTCATGGAGTTGCTGTTCCAGCTGGATGGGTTTGATCAGCTTGGGAAGGTGAAAATCATTATGGCAACAAATAGACCAGATACTCTAGACTCTGCGCTCCTCCGGCCTGGGGGCCTGGACCAAAAGATGAAGGCTCCGTTGCCTAATGAGCAGTCTAAGAATGGAGATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

82

Amino Acids

9.0

Weight (kDa)

4.61

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 1 - 71 1.4e-12 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0030242)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0016381
rosa_samantha Rh5CG136800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 184
AjnI CCWGG 2 cut(s) 181, 189
AloI GAACNNNNNNTCC 2 cut(s) 74, 106
AluBI AGCT 2 cut(s) 97, 115
AluI AGCT 2 cut(s) 97, 115
AoxI GGCC 2 cut(s) 179, 187
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 3 cut(s) 55, 187, 193
AsuHPI GGTGA 1 cut(s) 136
AvaII GGWCC 2 cut(s) 55, 193
BccI CCATC 1 cut(s) 95
BciT130I CCWGG 2 cut(s) 183, 191
BclI TGATCA 1 cut(s) 109
BfaI CTAG 1 cut(s) 161
Bme1390I CCNGG 2 cut(s) 183, 191
Bme18I GGWCC 2 cut(s) 55, 193
BmgT120I GGNCC 3 cut(s) 55, 187, 193
BmiI GGNNCC 2 cut(s) 188, 210
BmrFI CCNGG 2 cut(s) 183, 191
BsaJI CCNNGG 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 184
BseBI CCWGG 2 cut(s) 183, 191
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 2 cut(s) 10, 106
BseLI CCNNNNNNNGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 164
BshFI GGCC 2 cut(s) 181, 189
BsiSI CCGG 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 184
BsnI GGCC 2 cut(s) 181, 189
Bsp143I GATC 1 cut(s) 109
BspANI GGCC 2 cut(s) 181, 189
BspLI GGNNCC 2 cut(s) 188, 210
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 1 cut(s) 109
Bst2UI CCWGG 2 cut(s) 183, 191
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 2 cut(s) 10, 106
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 3 cut(s) 94, 178, 223
BstNI CCWGG 2 cut(s) 183, 191
BstSCI CCNGG 2 cut(s) 181, 189
BstXI CCANNNNNNTGG 1 cut(s) 101
BsuRI GGCC 2 cut(s) 181, 189
BtsCI GGATG 2 cut(s) 10, 106
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 3 cut(s) 55, 187, 193
CviAII CATG 2 cut(s) 59, 79
CviJI RGCY 5 cut(s) 97, 115, 181, 189, 209
CviKI_1 RGCY 5 cut(s) 97, 115, 181, 189, 209
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eco47I GGWCC 2 cut(s) 55, 193
Eco57I CTGAAG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 181, 189
FaeI CATG 2 cut(s) 62, 82
FaiI YATR 3 cut(s) 60, 80, 137
FatI CATG 2 cut(s) 58, 78
FbaI TGATCA 1 cut(s) 109
FokI GGATG 2 cut(s) 17, 113
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 171
HaeIII GGCC 2 cut(s) 181, 189
HapII CCGG 1 cut(s) 178
HhaI GCGC 1 cut(s) 172
Hin1II CATG 2 cut(s) 62, 82
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 3 cut(s) 72, 164, 242
HpaII CCGG 1 cut(s) 178
HphI GGTGA 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 161
HpyAV CCTTC 3 cut(s) 35, 115, 199
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 178, 223
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 2 cut(s) 62, 82
HspAI GCGC 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 3 cut(s) 26, 177, 214
LpnPI CCDG 8 cut(s) 83, 107, 165, 168, 176, 191, 195, 203
MaeI CTAG 1 cut(s) 161
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 2 cut(s) 86, 185
MseI TTAA 1 cut(s) 247
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 2 cut(s) 183, 191
MvaI CCWGG 2 cut(s) 183, 191
MwoI GCNNNNNNNGC 3 cut(s) 94, 178, 223
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 62, 82
NlaIV GGNNCC 2 cut(s) 188, 210
PfeI GAWTC 2 cut(s) 72, 242
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Psp6I CCWGG 2 cut(s) 181, 189
PspGI CCWGG 2 cut(s) 181, 189
PspN4I GGNNCC 2 cut(s) 188, 210
PspPI GGNCC 3 cut(s) 55, 187, 193
PvuII CAGCTG 1 cut(s) 97
SaqAI TTAA 1 cut(s) 247
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 3 cut(s) 55, 187, 193
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 183, 191
SetI ASST 4 cut(s) 46, 99, 117, 126
SinI GGWCC 2 cut(s) 55, 193
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 2 cut(s) 181, 189
TfiI GAWTC 2 cut(s) 72, 242
Tru1I TTAA 1 cut(s) 247
Tru9I TTAA 1 cut(s) 247
TspDTI ATGAA 2 cut(s) 75, 218
TspGWI ACGGA 2 cut(s) 68, 201
VpaK11BI GGWCC 2 cut(s) 55, 193
XbaI TCTAGA 1 cut(s) 160
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.