Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0030136

Physical Location & Seq

Genomic Coordinates Forward (+)

17618699 .. 17620254

Gene Structure 1556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG180200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTCCTTCTCCAACCTCAACATTTTGAGGTGTTGCACATCTTCCTCATCAGGAAGAGATCTCTTGCTACAAGTAGAAGTGAATACTACTGTTTTGAATTTTGAGGCAACTAAACAAAGAATAAAGAAGATGTTCAACAAGGTTGATCTCTCTGTTTCCTCATATGACACTGCTTGGGTGGCAATGGTCCCTTCTCCAAATTCTGAAAAGGAGCCTTTTTTCCCTGAATGCGTAAACTGGTTATTGGATAATCAACTTCATGATGGCACATGGGGTCCTCCTAATTTGCATCCATTGTTAACAAAAGATGCTCTCTCATCCACCTTGGCATGTATCCTTGCACTAAAGCAATGGAGTGTCGGTGAAGAACAAATTAACAAGGGGCTGCATTTTATCGAGTCAAACTTAGCTTCAGCTACTGATGAAGTGCAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

145

Amino Acids

16.15

Weight (kDa)

5.08

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030136)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0023431
rosa_samantha	Rh5CG180200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	97, 199
AcuI	CTGAAG	1 cut(s)	396
AgsI	TTSAA	2 cut(s)	97, 136
AluBI	AGCT	2 cut(s)	410, 416
AluI	AGCT	2 cut(s)	410, 416
AlwNI	CAGNNNCTG	1 cut(s)	419
ApeKI	GCWGC	2 cut(s)	385, 430
ApoI	RAATTY	2 cut(s)	97, 199
Asp700I	GAANNNNTTC	1 cut(s)	131
AspS9I	GGNCC	2 cut(s)	187, 275
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	2 cut(s)	187, 275
BbvI	GCAGC	1 cut(s)	372
BccI	CCATC	1 cut(s)	257
BciVI	GTATCC	1 cut(s)	344
BfuI	GTATCC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	2 cut(s)	386, 431
BlsI	GCNGC	2 cut(s)	387, 432
Bme18I	GGWCC	2 cut(s)	187, 275
BmgT120I	GGNCC	2 cut(s)	187, 275
BmiI	GGNNCC	3 cut(s)	189, 213, 276
BmsI	GCATC	2 cut(s)	298, 298
BsaJI	CCNNGG	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bse1I	ACTGG	1 cut(s)	242
Bse3DI	GCAATG	2 cut(s)	189, 356
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	2 cut(s)	289, 317
BseMI	GCAATG	2 cut(s)	189, 356
BseNI	ACTGG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	372
BslFI	GGGAC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	58, 145
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	3 cut(s)	189, 213, 276
BsrDI	GCAATG	2 cut(s)	189, 356
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	2 cut(s)	58, 145
BssT1I	CCWWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	406
BstF5I	GGATG	2 cut(s)	289, 317
BstKTI	GATC	2 cut(s)	61, 148
BstMBI	GATC	2 cut(s)	58, 145
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuI	GTATCC	1 cut(s)	344
BtsCI	GGATG	2 cut(s)	289, 317
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
CaiI	CAGNNNCTG	1 cut(s)	419
CciI	TCATGA	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	187, 275
CviAII	CATG	3 cut(s)	260, 270, 330
CviJI	RGCY	5 cut(s)	214, 385, 410, 416, 433
CviKI_1	RGCY	5 cut(s)	214, 385, 410, 416, 433
DdeI	CTNAG	1 cut(s)	406
DpnI	GATC	2 cut(s)	60, 147
DpnII	GATC	2 cut(s)	58, 145
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	187, 275
Eco57I	CTGAAG	1 cut(s)	396
EcoO109I	RGGNCCY	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	3 cut(s)	263, 273, 333
FaiI	YATR	6 cut(s)	163, 165, 261, 271, 331, 436
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	3 cut(s)	259, 269, 329
FauNDI	CATATG	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	386, 431
FokI	GGATG	2 cut(s)	276, 304
Fsp4HI	GCNGC	2 cut(s)	386, 431
GluI	GCNGC	2 cut(s)	386, 431
Hin1II	CATG	3 cut(s)	263, 273, 333
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	1 cut(s)	398
HpaI	GTTAAC	1 cut(s)	300
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	2 cut(s)	235, 300
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	2 cut(s)	51, 260
Hpy8I	GTNNAC	2 cut(s)	235, 300
HpyAV	CCTTC	2 cut(s)	16, 201
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	5 cut(s)	36, 289, 341, 388, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	406
Hsp92II	CATG	3 cut(s)	263, 273, 333
KspAI	GTTAAC	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	58, 145
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	3 cut(s)	36, 223, 237
Lsp1109I	GCAGC	1 cut(s)	372
LweI	GCATC	2 cut(s)	298, 298
MalI	GATC	2 cut(s)	60, 147
MboI	GATC	2 cut(s)	58, 145
MboII	GAAGA	4 cut(s)	33, 66, 139, 377
MflI	RGATCY	1 cut(s)	58
MluCI	AATT	4 cut(s)	97, 199, 283, 372
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	6 cut(s)	21, 26, 55, 97, 169, 288
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	2 cut(s)	299, 375
Mva1269I	GAATGC	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	2 cut(s)	58, 145
NlaIII	CATG	3 cut(s)	263, 273, 333
NlaIV	GGNNCC	3 cut(s)	189, 213, 276
NspI	RCATGY	1 cut(s)	333
PagI	TCATGA	1 cut(s)	259
PctI	GAATGC	1 cut(s)	233
PdmI	GAANNNNTTC	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	387, 432
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PpuMI	RGGWCCY	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	275
PspN4I	GGNNCC	3 cut(s)	189, 213, 276
PspPI	GGNCC	2 cut(s)	187, 275
PspPPI	RGGWCCY	1 cut(s)	275
PstNI	CAGNNNCTG	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	299, 375
SatI	GCNGC	2 cut(s)	386, 431
Sau3AI	GATC	2 cut(s)	58, 145
Sau96I	GGNCC	2 cut(s)	187, 275
SchI	GAGTC	1 cut(s)	407
SetI	ASST	6 cut(s)	18, 32, 144, 326, 412, 418
SfaNI	GCATC	2 cut(s)	298, 298
SinI	GGWCC	2 cut(s)	187, 275
Sse9I	AATT	4 cut(s)	97, 199, 283, 372
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	396
TasI	AATT	4 cut(s)	97, 199, 283, 372
Tru1I	TTAA	2 cut(s)	299, 375
Tru9I	TTAA	2 cut(s)	299, 375
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	2 cut(s)	385, 430
TspDTI	ATGAA	2 cut(s)	248, 438
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	187, 275
XapI	RAATTY	2 cut(s)	97, 199
XceI	RCATGY	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.