Rh5CG190400
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0031155
Physical Location & Seq
Reverse (-)
18980863 .. 18981489
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG190400.1

Sequence Viewer

Length: 627 bp
ATGTATAGAGTAATTGGTCTTGAGGAGGACTTGATCCAAATGCTTCTAGCGCGGCCGACATTGATCACAAAAACTTTATTTAGTGAAGAGAAGATGGAGTTTATCCGCAAGACCGGGGTGTCAAAGACTTCCACAATGTTTAAGTATGTAGTCACACTCATTGGCGTTTCGCACCTCGAAACTATCTGTCAGAAGATAGCAAACTTTGAGAAGTTTGGTATGTCAGAAGAAGAGATTTTCTGTCTTTTTGGGAGGTCTCCCTATGTTATGTCACTGTCAATTGATAAGGTTCTGAGAAACATGACTTTCATCTTATCACAATTGAAGCTTCCTGCTAAAATAGTTCTTGATTGCCCAAGTTTGCTATACTTGAATATGGAGAATGTGATGAAGCCACGAGCACTTCTCGCAGCGAAGATGCACGAAATGGGACTTGAACTGCAGATTACAGGTCCTATGATCTTGACTGTAATGAGGATGAATGAGAAGAGATTTCTGAAGGCATTTGTTAGTCATCAACCGATGGAGGTTGCTGATGAATTGATGGAGTACTACGAAAATGTGAAGGGTGTGAAGCGATTGGCAGAAGCCTCGAAGAAGAACTTGAATTATGGGTTTCCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

208

Amino Acids

24.0

Weight (kDa)

8.87

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 8 - 166 4e-20 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031155)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001757.1_g000015
rosa_samantha Rh5CG190400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 118
AccII CGCG 1 cut(s) 52
AciI CCGC 2 cut(s) 52, 106
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 518
AfaI GTAC 1 cut(s) 551
AgsI TTSAA 4 cut(s) 325, 373, 437, 607
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
Alw21I GWGCWC 1 cut(s) 403
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 1 cut(s) 28
AoxI GGCC 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 410
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 452
AsuC2I CCSGG 1 cut(s) 115
AvaII GGWCC 1 cut(s) 452
BauI CACGAG 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 403
BbvI GCAGC 1 cut(s) 422
BccI CCATC 3 cut(s) 88, 517, 538
BcgI CGANNNNNNTGC 2 cut(s) 573, 607
BclI TGATCA 1 cut(s) 63
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 440
BisI GCNGC 2 cut(s) 53, 411
BlsI GCNGC 2 cut(s) 54, 412
BmcAI AGTACT 1 cut(s) 551
Bme1390I CCNGG 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 452
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 1 cut(s) 408
BplI GAGNNNNNCTC 2 cut(s) 390, 422
BpuEI CTTGAG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 115
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 483
BseMII CTCAG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 38
BseX3I CGGCCG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 422
Bsh1236I CGCG 1 cut(s) 52
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 1 cut(s) 55
BsiEI CGRYCG 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 403
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 444
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 444
BsnI GGCC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 3 cut(s) 33, 63, 459
BspACI CCGC 2 cut(s) 52, 106
BspANI GGCC 1 cut(s) 55
BspCNI CTCAG 1 cut(s) 285
BspFNI CGCG 1 cut(s) 52
BspMAI CTGCAG 1 cut(s) 444
BspPI GGATC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 3 cut(s) 33, 63, 459
BssSI CACGAG 1 cut(s) 396
Bst2BI CACGAG 1 cut(s) 396
Bst4CI ACNGT 2 cut(s) 276, 469
Bst6I CTCTTC 3 cut(s) 81, 225, 482
BstDEI CTNAG 1 cut(s) 293
BstF5I GGATG 1 cut(s) 483
BstFNI CGCG 1 cut(s) 52
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 3 cut(s) 36, 66, 462
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 3 cut(s) 33, 63, 459
BstMCI CGRYCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 2 cut(s) 49, 407
BstSCI CCNGG 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 440
BstUI CGCG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 422
BstZI CGGCCG 1 cut(s) 53
BsuRI GGCC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 483
BtsIMutI CAGTG 1 cut(s) 272
CfoI GCGC 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 452
Csp6I GTAC 1 cut(s) 550
CviAII CATG 1 cut(s) 301
CviJI RGCY 4 cut(s) 55, 328, 394, 590
CviKI_1 RGCY 4 cut(s) 55, 328, 394, 590
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 1 cut(s) 293
DpnI GATC 3 cut(s) 35, 65, 461
DpnII GATC 3 cut(s) 33, 63, 459
DrdI GACNNNNNNGTC 1 cut(s) 118
DseDI GACNNNNNNGTC 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 53
EagI CGGCCG 1 cut(s) 53
Eam1104I CTCTTC 3 cut(s) 81, 225, 482
EarI CTCTTC 3 cut(s) 81, 225, 482
EclXI CGGCCG 1 cut(s) 53
Eco31I GGTCTC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 452
Eco52I CGGCCG 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 452
FaeI CATG 1 cut(s) 304
FalI AAGNNNNNCTT 2 cut(s) 587, 619
FaqI GGGAC 1 cut(s) 444
FatI CATG 1 cut(s) 300
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 53, 411
FokI GGATG 1 cut(s) 490
Fsp4HI GCNGC 2 cut(s) 53, 411
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 51
GluI GCNGC 2 cut(s) 53, 411
HaeIII GGCC 1 cut(s) 55
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 52
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HindIII AAGCTT 1 cut(s) 326
HpaII CCGG 1 cut(s) 114
Hpy188I TCNGA 5 cut(s) 192, 226, 294, 498, 626
Hpy188III TCNNGA 3 cut(s) 20, 347, 463
HpyAV CCTTC 2 cut(s) 493, 559
HpyCH4III ACNGT 2 cut(s) 276, 469
HpyCH4V TGCA 2 cut(s) 421, 442
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 407
HpyF3I CTNAG 1 cut(s) 293
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 1 cut(s) 50
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 3 cut(s) 33, 63, 459
LpnPI CCDG 3 cut(s) 127, 345, 435
Lsp1109I GCAGC 1 cut(s) 422
LweI GCATC 1 cut(s) 408
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 151, 270
MalI GATC 3 cut(s) 35, 65, 461
MboI GATC 3 cut(s) 33, 63, 459
MboII GAAGA 9 cut(s) 98, 103, 205, 239, 242, 427, 499, 607, 610
MfeI CAATTG 2 cut(s) 279, 320
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 5 cut(s) 12, 279, 320, 539, 607
MnlI CCTC 7 cut(s) 16, 19, 185, 246, 468, 520, 601
MseI TTAA 1 cut(s) 141
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 115
MunI CAATTG 2 cut(s) 279, 320
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 2 cut(s) 49, 407
NciI CCSGG 1 cut(s) 115
NdeII GATC 3 cut(s) 33, 63, 459
NlaIII CATG 1 cut(s) 304
NmuCI GTSAC 2 cut(s) 151, 270
PkrI GCNGC 2 cut(s) 54, 412
PpuMI RGGWCCY 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 452
PspPI GGNCC 1 cut(s) 452
PspPPI RGGWCCY 1 cut(s) 452
PstI CTGCAG 1 cut(s) 444
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 2 cut(s) 53, 411
Sau3AI GATC 3 cut(s) 33, 63, 459
Sau96I GGNCC 1 cut(s) 452
ScaI AGTACT 1 cut(s) 551
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 1 cut(s) 403
SetI ASST 6 cut(s) 177, 257, 291, 330, 454, 531
SfaNI GCATC 1 cut(s) 408
SfcI CTRYAG 1 cut(s) 440
SinI GGWCC 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 5 cut(s) 12, 279, 320, 539, 607
SsiI CCGC 2 cut(s) 52, 106
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 113
TaaI ACNGT 2 cut(s) 276, 469
TaqI TCGA 2 cut(s) 177, 593
TasI AATT 5 cut(s) 12, 279, 320, 539, 607
TatI WGTACW 1 cut(s) 549
TauI GCSGC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 2 cut(s) 151, 270
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 2 cut(s) 151, 270
TspDTI ATGAA 4 cut(s) 298, 404, 494, 552
TspRI CASTG 1 cut(s) 279
VpaK11BI GGWCC 1 cut(s) 452
XspI CTAG 1 cut(s) 47
ZrmI AGTACT 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.