Rh5CG202300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0034503
Physical Location & Seq
Forward (+)
20356979 .. 20357550
572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG202300.1

Sequence Viewer

Length: 546 bp
ATGAAGTACCTGGAGTTGAGCAATTGCAAGAGTCTTAGGTCTTTGTCTGTCAAGCTCCCTTCTGGGTTGAAGTACCTAGAGTTGAGCAATTGCAAGTCTCTTAGCTCTTTGCCTGTCAAGCTCCCTTCTGGGTTGATAACACTGGACTTGAGCAATTGCAAGAGTCTTGGGTCTTTGCCTGCCCAGCTACCTTCTTGGTTGGAAGACCTCAACTTGAGCAACTGTGAGAGTCTTCGATCTCTACCTGTCGAGCTCCCTTCTGGGCTGATGTACCTGGAGTTGAGCAATTGCAAGAGTCTTAGGTCTTTGCCTGTTGAGCTACCTGGAGTGATAACGCTGGACTTGAGCAATTGCAAGAGTCTTGAGTCTTTGCCTCCTCGGCTACCTTCTTGGCTGGAGGATCTCAACTTGAGCAATTGTGAGAGTCTTCGATCTCTACCTGTCAAGCTCCCTTCTGGGCTGATAACACTGGCCCTGAGAAATTCTCCCATTGCTTCTAAAATATTTGGATGCACATGGCTGCACATCACTAGAGATAGTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.8

Weight (kDa)

8.42

Isoelectric Point (pI)

64.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0034503)

Species Orthologous Gene IDs
rosa_samantha Rh5CG202300 Rh5DG184800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 408
AcsI RAATTY 1 cut(s) 481
AfaI GTAC 3 cut(s) 8, 74, 272
AgsI TTSAA 1 cut(s) 70
AjnI CCWGG 3 cut(s) 9, 273, 322
AluBI AGCT 7 cut(s) 55, 105, 121, 187, 253, 319, 448
AluI AGCT 7 cut(s) 55, 105, 121, 187, 253, 319, 448
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 1 cut(s) 408
AoxI GGCC 1 cut(s) 471
ApeKI GCWGC 1 cut(s) 520
ApoI RAATTY 1 cut(s) 481
AspS9I GGNCC 1 cut(s) 472
BanII GRGCYC 1 cut(s) 255
BbsI GAAGAC 3 cut(s) 210, 224, 419
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 507
BciT130I CCWGG 3 cut(s) 11, 275, 324
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 3 cut(s) 77, 531, 544
BglI GCCNNNNNGGC 1 cut(s) 379
BisI GCNGC 1 cut(s) 521
BlsI GCNGC 1 cut(s) 522
Bme1390I CCNGG 3 cut(s) 11, 275, 324
BmgT120I GGNCC 1 cut(s) 472
BmrFI CCNGG 3 cut(s) 11, 275, 324
BmsI GCATC 1 cut(s) 500
BpiI GAAGAC 3 cut(s) 210, 224, 419
BplI GAGNNNNNCTC 3 cut(s) 469, 501, 525
BpmI CTGGAG 4 cut(s) 32, 296, 345, 416
BpuEI CTTGAG 5 cut(s) 169, 235, 364, 383, 430
BsaJI CCNNGG 1 cut(s) 377
Bse1I ACTGG 2 cut(s) 147, 474
Bse3DI GCAATG 1 cut(s) 489
BseBI CCWGG 3 cut(s) 11, 275, 324
BseDI CCNNGG 1 cut(s) 377
BseGI GGATG 1 cut(s) 515
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 1 cut(s) 467
BseNI ACTGG 2 cut(s) 147, 474
BseRI GAGGAG 1 cut(s) 366
BseXI GCAGC 1 cut(s) 507
BseYI CCCAGC 1 cut(s) 183
BsgI GTGCAG 1 cut(s) 506
BshFI GGCC 1 cut(s) 473
BsiHKAI GWGCWC 1 cut(s) 255
BsmAI GTCTC 1 cut(s) 102
BsnI GGCC 1 cut(s) 473
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 3 cut(s) 236, 400, 431
BspANI GGCC 1 cut(s) 473
BspCNI CTCAG 1 cut(s) 468
BspPI GGATC 1 cut(s) 408
BsrDI GCAATG 1 cut(s) 489
BsrI ACTGG 2 cut(s) 147, 474
BssECI CCNNGG 1 cut(s) 377
BssMI GATC 3 cut(s) 236, 400, 431
Bst2UI CCWGG 3 cut(s) 11, 275, 324
Bst4CI ACNGT 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 4 cut(s) 35, 101, 299, 476
BstF5I GGATG 1 cut(s) 515
BstKTI GATC 3 cut(s) 239, 403, 434
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 3 cut(s) 236, 400, 431
BstMWI GCNNNNNNNGC 4 cut(s) 118, 184, 316, 379
BstNI CCWGG 3 cut(s) 11, 275, 324
BstSCI CCNGG 3 cut(s) 9, 273, 322
BstV1I GCAGC 1 cut(s) 507
BstV2I GAAGAC 3 cut(s) 210, 224, 419
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
BsuRI GGCC 1 cut(s) 473
BtsCI GGATG 1 cut(s) 515
BtsIMutI CAGTG 2 cut(s) 140, 467
Cac8I GCNNGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 472
Csp6I GTAC 3 cut(s) 7, 73, 271
CviAII CATG 1 cut(s) 516
CviQI GTAC 3 cut(s) 7, 73, 271
DdeI CTNAG 4 cut(s) 35, 101, 299, 476
DpnI GATC 3 cut(s) 238, 402, 433
DpnII GATC 3 cut(s) 236, 400, 431
Ecl136II GAGCTC 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 255
Eco53kI GAGCTC 1 cut(s) 253
EcoICRI GAGCTC 1 cut(s) 253
EcoRII CCWGG 3 cut(s) 9, 273, 322
EcoT38I GRGCYC 1 cut(s) 255
FaeI CATG 1 cut(s) 519
FaiI YATR 1 cut(s) 517
FatI CATG 1 cut(s) 515
Fnu4HI GCNGC 1 cut(s) 521
FokI GGATG 1 cut(s) 522
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 521
FspBI CTAG 3 cut(s) 77, 531, 544
GluI GCNGC 1 cut(s) 521
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 4 cut(s) 32, 296, 345, 416
HaeIII GGCC 1 cut(s) 473
Hin1II CATG 1 cut(s) 519
HinfI GANTC 7 cut(s) 31, 163, 229, 295, 358, 365, 424
Hpy188III TCNNGA 1 cut(s) 362
HpyAV CCTTC 6 cut(s) 69, 135, 201, 267, 396, 462
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4V TGCA 7 cut(s) 27, 93, 159, 291, 354, 513, 523
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 184, 316, 379
HpyF3I CTNAG 4 cut(s) 35, 101, 299, 476
Hsp92II CATG 1 cut(s) 519
Kzo9I GATC 3 cut(s) 236, 400, 431
LmnI GCTCC 4 cut(s) 60, 126, 258, 453
Lsp1109I GCAGC 1 cut(s) 507
LweI GCATC 1 cut(s) 500
MaeI CTAG 3 cut(s) 77, 531, 544
MalI GATC 3 cut(s) 238, 402, 433
MboI GATC 3 cut(s) 236, 400, 431
MboII GAAGA 3 cut(s) 215, 224, 419
MfeI CAATTG 6 cut(s) 22, 88, 154, 286, 349, 415
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 7 cut(s) 22, 88, 154, 286, 349, 415, 481
MlyI GAGTC 7 cut(s) 40, 172, 238, 304, 367, 374, 433
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 4 cut(s) 218, 384, 387, 391
MspR9I CCNGG 3 cut(s) 11, 275, 324
MunI CAATTG 6 cut(s) 22, 88, 154, 286, 349, 415
MvaI CCWGG 3 cut(s) 11, 275, 324
MwoI GCNNNNNNNGC 4 cut(s) 118, 184, 316, 379
NdeII GATC 3 cut(s) 236, 400, 431
NlaIII CATG 1 cut(s) 519
NmeAIII GCCGAG 1 cut(s) 358
PkrI GCNGC 1 cut(s) 522
PleI GAGTC 7 cut(s) 39, 171, 237, 303, 366, 373, 432
PpsI GAGTC 7 cut(s) 39, 171, 237, 303, 366, 373, 432
Psp124BI GAGCTC 1 cut(s) 255
Psp6I CCWGG 3 cut(s) 9, 273, 322
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 3 cut(s) 9, 273, 322
PspPI GGNCC 1 cut(s) 472
PsuI RGATCY 1 cut(s) 400
RsaI GTAC 3 cut(s) 8, 74, 272
RsaNI GTAC 3 cut(s) 7, 73, 271
SacI GAGCTC 1 cut(s) 255
SatI GCNGC 1 cut(s) 521
Sau3AI GATC 3 cut(s) 236, 400, 431
Sau96I GGNCC 1 cut(s) 472
SchI GAGTC 7 cut(s) 40, 172, 238, 304, 367, 374, 433
ScrFI CCNGG 3 cut(s) 11, 275, 324
SduI GDGCHC 1 cut(s) 255
SfaNI GCATC 1 cut(s) 500
SmlI CTYRAG 5 cut(s) 148, 214, 343, 362, 409
SmoI CTYRAG 5 cut(s) 148, 214, 343, 362, 409
Sse9I AATT 7 cut(s) 22, 88, 154, 286, 349, 415, 481
SspI AATATT 1 cut(s) 504
SspMI CTAG 3 cut(s) 77, 531, 544
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 3 cut(s) 9, 273, 322
TaaI ACNGT 1 cut(s) 224
TaqI TCGA 3 cut(s) 235, 249, 430
TasI AATT 7 cut(s) 22, 88, 154, 286, 349, 415, 481
TscAI CASTG 2 cut(s) 147, 474
TseI GCWGC 1 cut(s) 520
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 147, 474
XapI RAATTY 1 cut(s) 481
XspI CTAG 3 cut(s) 77, 531, 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.