Rh5CG407700

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0030152
Physical Location & Seq
Reverse (-)
54750477 .. 54753256
2780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG407700.1

Sequence Viewer

Length: 441 bp
ATGTTATTATTTGCTAGAGCCATTTATCCTAATGAAAATATACAATGCCAGTGCATTTTACTGTATGTAGGATCTACTAATATCTCAAGTCAGTTTGGACCGTCAATACAATTTCTGATAACTTTTTCAACTTTTTCCACCTGCATATGTGTTCCAAGTCCTTCATACAATGTACTGCTAGGCAGAAGCGATGCACGAACACAAGGCACGAATGACACGCACAGAAACCAACCTGCTCCACTTTTCAGCTTCTCACAGTGGAAATCTAGCTTTCCATCCCATCGCCTCAACCTCAAACACTCAGTAGTCCTCTCAGCTGCTCACACCATCGGACTTGCTCGCTGCGCTACATTCAGAGATGGGATTTACAATGACACGAACATAGATGTACAACTTTGCAGCTTCTGCAAAACGAATCTGCCAATCAAGTTGTGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

146

Amino Acids

16.34

Weight (kDa)

9.12

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 53 - 133 2e-14 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030152)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0056911
rosa_samantha Rh5CG407700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 149
Acc36I ACCTGC 2 cut(s) 149, 241
AclWI GGATC 1 cut(s) 79
AfaI GTAC 2 cut(s) 174, 390
AgsI TTSAA 1 cut(s) 129
AluBI AGCT 4 cut(s) 249, 270, 317, 402
AluI AGCT 4 cut(s) 249, 270, 317, 402
AlwI GGATC 1 cut(s) 79
AlwNI CAGNNNCTG 1 cut(s) 405
ApeKI GCWGC 3 cut(s) 317, 342, 399
AspLEI GCGC 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 98
AvaII GGWCC 1 cut(s) 98
BbvI GCAGC 3 cut(s) 304, 329, 411
BccI CCATC 4 cut(s) 283, 288, 335, 353
BfaI CTAG 3 cut(s) 15, 179, 267
BfuAI ACCTGC 2 cut(s) 149, 241
BisI GCNGC 3 cut(s) 318, 343, 400
BlsI GCNGC 3 cut(s) 319, 344, 401
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmsI GCATC 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 49
BseGI GGATG 1 cut(s) 275
BseMII CTCAG 2 cut(s) 315, 327
BseNI ACTGG 1 cut(s) 49
BseXI GCAGC 3 cut(s) 304, 329, 411
Bsp1407I TGTACA 1 cut(s) 388
Bsp143I GATC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 314, 326
BspMI ACCTGC 2 cut(s) 149, 241
BspPI GGATC 1 cut(s) 79
BsrGI TGTACA 1 cut(s) 388
BsrI ACTGG 1 cut(s) 49
BssMI GATC 1 cut(s) 71
Bst4CI ACNGT 3 cut(s) 63, 102, 258
BstAPI GCANNNNNTGC 1 cut(s) 405
BstAUI TGTACA 1 cut(s) 388
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 2 cut(s) 301, 313
BstF5I GGATG 1 cut(s) 275
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 1 cut(s) 74
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 2 cut(s) 344, 405
BstV1I GCAGC 3 cut(s) 304, 329, 411
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BtgZI GCGATG 2 cut(s) 204, 266
BtsCI GGATG 1 cut(s) 275
BtsIMutI CAGTG 2 cut(s) 56, 263
BveI ACCTGC 2 cut(s) 149, 241
Cac8I GCNNGC 1 cut(s) 340
CaiI CAGNNNCTG 1 cut(s) 405
CfoI GCGC 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 2 cut(s) 173, 389
CviJI RGCY 5 cut(s) 20, 249, 270, 317, 402
CviKI_1 RGCY 5 cut(s) 20, 249, 270, 317, 402
CviQI GTAC 2 cut(s) 173, 389
DdeI CTNAG 2 cut(s) 301, 313
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 98
FaiI YATR 6 cut(s) 41, 66, 146, 148, 166, 383
FauNDI CATATG 1 cut(s) 146
Fnu4HI GCNGC 3 cut(s) 318, 343, 400
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 3 cut(s) 318, 343, 400
FspBI CTAG 3 cut(s) 15, 179, 267
GlaI GCGC 1 cut(s) 346
GluI GCNGC 3 cut(s) 318, 343, 400
HhaI GCGC 1 cut(s) 347
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HinfI GANTC 1 cut(s) 415
Hpy188I TCNGA 3 cut(s) 117, 332, 356
HpyAV CCTTC 1 cut(s) 171
HpyCH4III ACNGT 3 cut(s) 63, 102, 258
HpyCH4V TGCA 5 cut(s) 54, 144, 194, 399, 408
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 405
HpyF3I CTNAG 2 cut(s) 301, 313
HspAI GCGC 1 cut(s) 345
Kzo9I GATC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 3 cut(s) 62, 154, 246
Lsp1109I GCAGC 3 cut(s) 304, 329, 411
LweI GCATC 1 cut(s) 181
MaeI CTAG 3 cut(s) 15, 179, 267
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MflI RGATCY 1 cut(s) 71
MluCI AATT 1 cut(s) 110
MnlI CCTC 3 cut(s) 296, 302, 320
MspA1I CMGCKG 1 cut(s) 317
MwoI GCNNNNNNNGC 2 cut(s) 344, 405
NdeI CATATG 1 cut(s) 146
NdeII GATC 1 cut(s) 71
PaqCI CACCTGC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 415
PkrI GCNGC 3 cut(s) 319, 344, 401
PspPI GGNCC 1 cut(s) 98
PstNI CAGNNNCTG 1 cut(s) 405
PsuI RGATCY 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 2 cut(s) 174, 390
RsaNI GTAC 2 cut(s) 173, 389
SatI GCNGC 3 cut(s) 318, 343, 400
Sau3AI GATC 1 cut(s) 71
Sau96I GGNCC 1 cut(s) 98
SetI ASST 7 cut(s) 143, 235, 251, 272, 294, 319, 404
SfaNI GCATC 1 cut(s) 181
SinI GGWCC 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 1 cut(s) 110
SspMI CTAG 3 cut(s) 15, 179, 267
TaaI ACNGT 3 cut(s) 63, 102, 258
TasI AATT 1 cut(s) 110
TatI WGTACW 2 cut(s) 172, 388
TfiI GAWTC 1 cut(s) 415
TscAI CASTG 2 cut(s) 56, 263
TseI GCWGC 3 cut(s) 317, 342, 399
TspDTI ATGAA 2 cut(s) 48, 153
TspRI CASTG 2 cut(s) 56, 263
VpaK11BI GGWCC 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 429
XspI CTAG 3 cut(s) 15, 179, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.