Rh5DG028600
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
2053487 .. 2053714
228 bp
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UTR
Exon/CDS
Intron
Rh5DG028600.1

Sequence Viewer

Length: 228 bp
ATGGATCAAGAACTCACAACAGGCTTCCGTTTCTATCCAACTGAAGAAGAACTCGTCTCCTTCTACCTCCTCAACAGGAGAAAGAGCCGAAGAGGCATGGTATTGGAGCAAGATAGACTTAATTATCTGGACAAGTTTCGTTTGAGAAGTGAGAACGAGAGAGATTCAGCAGCAGAGAAGAACAAAAGTCACGTACAGAGCTACAGGCGTACAGCGATGAAACAATAA

Protein Analysis

75

Amino Acids

9.17

Weight (kDa)

9.69

Isoelectric Point (pI)

83.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0034480)

Species Orthologous Gene IDs
rosa_samantha Rh5DG028200 Rh5DG028600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 63
AfaI GTAC 2 cut(s) 195, 211
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 61
BfmI CTRYAG 1 cut(s) 202
BglI GCCNNNNNGGC 1 cut(s) 93
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BsaAI YACGTR 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 61
BsmBI CGTCTC 1 cut(s) 61
Bsp143I GATC 1 cut(s) 4
BspPI GGATC 1 cut(s) 12
BssMI GATC 1 cut(s) 4
Bst6I CTCTTC 1 cut(s) 85
BstBAI YACGTR 1 cut(s) 193
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 194, 210
CviAII CATG 1 cut(s) 97
CviJI RGCY 3 cut(s) 24, 87, 201
CviKI_1 RGCY 3 cut(s) 24, 87, 201
CviQI GTAC 2 cut(s) 194, 210
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 1 cut(s) 100
FaiI YATR 1 cut(s) 98
FalI AAGNNNNNCTT 2 cut(s) 102, 134
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 171
Hin1II CATG 1 cut(s) 100
HinfI GANTC 1 cut(s) 164
Hpy188III TCNNGA 2 cut(s) 8, 128
HpyAV CCTTC 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 4 cut(s) 6, 61, 113, 190
Lsp1109I GCAGC 1 cut(s) 182
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 188
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 4 cut(s) 56, 59, 102, 190
MluCI AATT 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 3 cut(s) 77, 80, 86
MseI TTAA 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 93
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 172
Ppu21I YACGTR 1 cut(s) 193
RsaI GTAC 2 cut(s) 195, 211
RsaNI GTAC 2 cut(s) 194, 210
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 1 cut(s) 4
SetI ASST 3 cut(s) 69, 195, 203
SfcI CTRYAG 1 cut(s) 202
Sse9I AATT 1 cut(s) 121
TaiI ACGT 1 cut(s) 195
TasI AATT 1 cut(s) 121
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 188
TspGWI ACGGA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.