Rh5DG036500
NAC Family

Inactive leucine-rich repeat receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0034481
Physical Location & Seq
Forward (+)
2557126 .. 2557821
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG036500.1

Sequence Viewer

Length: 696 bp
ATGAAAGGAAGAGTCACGAAGTTGGTGTTGGAGTACTTAAATTTGACCGGCACTCTCGACCAGAAAATCCTGAACCAGCTGGATCAGCTCCGAGTTCTGAGCTTCAAGGGCAACTCAATTTTCGGCCAAATTCCCGACCTCTCCGGCCTCGTCAATCTCAAGTCCCTCTTCTTGAACGACAACAATTTCTCCGGCGTTTTCCCCGCGTCCGTTTCGTCCCTCCACCGCTTGAAAGTCCTCGTCCTTGCCGGCAACCACATCTCCGGCGACATTCCGGCGTCGCTGCTCAATCTCCGCCGGCTATATGTTCTGTATTTACAAGACAATCAGTTCAGCGGCACCATTCCGCCGCTCAATCAAACCTCCCTCCGGTTTTTCAATGTCTCTAACAACCAACTCTCCGGCGAAATCCCGATCACGGCGGCGCTCATTCAGTTCAACGCCTCGTCGTTTTTCGGAAACATCAATGTCTGCGGTCTGCAGATTCACAACAAATGCCAGAACGGCATTGCTTTCCCGCCGCTACTCGGGCCAAGTTCTTATGATGATGGTAAACCTACAAAGTCGAAATCCAATCGTTCCAAGCTCATAAAAATCATAGCAGCAAGTGTAGGAGGTTTTGTGCTGCTTGTTATAAGTTTGCTTCTATTGTTAAAGACTGATAGAGTTTGGATAGAAGTAGCAGAAGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

231

Amino Acids

25.31

Weight (kDa)

9.55

Isoelectric Point (pI)

27.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 24 - 109 1.3e-06 Leucine-rich repeat region
LRR_8 PF13855 52 - 111 2.3e-09 Leucine rich repeat
LRR_4 PF12799 76 - 119 9.4e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0034481)

Species Orthologous Gene IDs
rosa_samantha Rh5DG036500 Rh5DG554500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 635
AccB1I GGYRCC 1 cut(s) 338
AccBSI CCGCTC 1 cut(s) 352
AccII CGCG 1 cut(s) 206
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 2 cut(s) 40, 129
AcyI GRCGYC 1 cut(s) 278
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 3 cut(s) 369, 418, 527
AgsI TTSAA 5 cut(s) 106, 175, 232, 379, 439
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
AluBI AGCT 4 cut(s) 79, 88, 102, 586
AluI AGCT 4 cut(s) 79, 88, 102, 586
Alw26I GTCTC 1 cut(s) 388
AlwI GGATC 1 cut(s) 90
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 3 cut(s) 124, 145, 530
ApeKI GCWGC 3 cut(s) 283, 602, 625
ApoI RAATTY 2 cut(s) 40, 129
AspLEI GCGC 1 cut(s) 427
AspS9I GGNCC 1 cut(s) 530
AvaI CYCGRG 1 cut(s) 527
BanI GGYRCC 1 cut(s) 338
BbvI GCAGC 3 cut(s) 270, 612, 614
BccI CCATC 1 cut(s) 542
BceAI ACGGC 2 cut(s) 435, 520
BcoDI GTCTC 1 cut(s) 388
BfmI CTRYAG 1 cut(s) 479
BfoI RGCGCY 1 cut(s) 428
BglI GCCNNNNNGGC 1 cut(s) 504
BisI GCNGC 7 cut(s) 284, 337, 350, 423, 521, 603, 626
BlsI GCNGC 7 cut(s) 285, 338, 351, 424, 522, 604, 627
BmcAI AGTACT 1 cut(s) 35
BmeT110I CYCGRG 1 cut(s) 527
BmgT120I GGNCC 1 cut(s) 530
BmiI GGNNCC 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 278
BsaWI WCCGGW 1 cut(s) 369
BsaXI ACNNNNNCTCC 8 cut(s) 173, 203, 245, 275, 383, 413, 606, 636
Bsc4I CCNNNNNNNGG 3 cut(s) 369, 418, 527
Bse118I RCCGGY 3 cut(s) 47, 248, 297
Bse3DI GCAATG 1 cut(s) 507
BseLI CCNNNNNNNGG 3 cut(s) 369, 418, 527
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 1 cut(s) 89
BseXI GCAGC 3 cut(s) 270, 612, 614
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 3 cut(s) 126, 147, 532
BshNI GGYRCC 1 cut(s) 338
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 9 cut(s) 48, 144, 192, 249, 264, 275, 298, 370, 402
BslFI GGGAC 2 cut(s) 148, 202
BslI CCNNNNNNNGG 3 cut(s) 369, 418, 527
BsmAI GTCTC 1 cut(s) 388
BsmFI GGGAC 2 cut(s) 148, 202
BsnI GGCC 3 cut(s) 126, 147, 532
BsoBI CYCGRG 1 cut(s) 527
Bsp143I GATC 2 cut(s) 82, 414
BspANI GGCC 3 cut(s) 126, 147, 532
BspCNI CTCAG 1 cut(s) 90
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 340
BspMAI CTGCAG 1 cut(s) 483
BspPI GGATC 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 338
BsrBI CCGCTC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 507
BsrFI RCCGGY 3 cut(s) 47, 248, 297
BssAI RCCGGY 3 cut(s) 47, 248, 297
BssMI GATC 2 cut(s) 82, 414
BssNI GRCGYC 1 cut(s) 278
Bst6I CTCTTC 2 cut(s) 4, 173
BstACI GRCGYC 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 250, 299
BstDEI CTNAG 1 cut(s) 98
BstFNI CGCG 1 cut(s) 206
BstH2I RGCGCY 1 cut(s) 428
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 2 cut(s) 85, 417
BstMAI GTCTC 1 cut(s) 388
BstMBI GATC 2 cut(s) 82, 414
BstMWI GCNNNNNNNGC 4 cut(s) 85, 108, 504, 529
BstSFI CTRYAG 1 cut(s) 479
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 3 cut(s) 270, 612, 614
BsuRI GGCC 3 cut(s) 126, 147, 532
Cac8I GCNNGC 2 cut(s) 250, 299
CfoI GCGC 1 cut(s) 427
Cfr10I RCCGGY 3 cut(s) 47, 248, 297
Cfr13I GGNCC 1 cut(s) 530
CseI GACGC 2 cut(s) 195, 267
Csp6I GTAC 1 cut(s) 34
CviJI RGCY 8 cut(s) 79, 88, 102, 126, 147, 301, 532, 586
CviKI_1 RGCY 8 cut(s) 79, 88, 102, 126, 147, 301, 532, 586
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 98
DpnI GATC 2 cut(s) 84, 416
DpnII GATC 2 cut(s) 82, 414
EaeI YGGCCR 1 cut(s) 124
Eam1104I CTCTTC 2 cut(s) 4, 173
EarI CTCTTC 2 cut(s) 4, 173
EciI GGCGGA 2 cut(s) 284, 336
Eco88I CYCGRG 1 cut(s) 527
FaiI YATR 7 cut(s) 304, 306, 543, 590, 599, 635, 692
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 2 cut(s) 148, 202
FauI CCCGC 2 cut(s) 211, 525
Fnu4HI GCNGC 7 cut(s) 284, 337, 350, 423, 521, 603, 626
Fsp4HI GCNGC 7 cut(s) 284, 337, 350, 423, 521, 603, 626
GlaI GCGC 1 cut(s) 426
GluI GCNGC 7 cut(s) 284, 337, 350, 423, 521, 603, 626
HaeII RGCGCY 1 cut(s) 428
HaeIII GGCC 3 cut(s) 126, 147, 532
HapII CCGG 9 cut(s) 48, 144, 192, 249, 264, 275, 298, 370, 402
HgaI GACGC 2 cut(s) 195, 267
HhaI GCGC 1 cut(s) 427
Hin1I GRCGYC 1 cut(s) 278
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HinfI GANTC 2 cut(s) 12, 484
HpaII CCGG 9 cut(s) 48, 144, 192, 249, 264, 275, 298, 370, 402
Hpy166II GTNNAC 1 cut(s) 554
Hpy188I TCNGA 3 cut(s) 92, 99, 458
Hpy188III TCNNGA 6 cut(s) 16, 56, 70, 134, 172, 412
Hpy8I GTNNAC 1 cut(s) 554
Hpy99I CGWCG 2 cut(s) 283, 451
HpyCH4V TGCA 1 cut(s) 481
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 108, 504, 529
HpyF3I CTNAG 1 cut(s) 98
Hsp92I GRCGYC 1 cut(s) 278
HspAI GCGC 1 cut(s) 425
KroI GCCGGC 2 cut(s) 248, 297
KroNI GCCGGC 2 cut(s) 250, 299
Kzo9I GATC 2 cut(s) 82, 414
LmnI GCTCC 1 cut(s) 93
Lsp1109I GCAGC 3 cut(s) 270, 612, 614
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 84, 416
MbiI CCGCTC 1 cut(s) 352
MboI GATC 2 cut(s) 82, 414
MboII GAAGA 2 cut(s) 21, 160
MluCI AATT 4 cut(s) 40, 117, 129, 184
MlyI GAGTC 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 9 cut(s) 149, 158, 176, 230, 248, 373, 377, 454, 608
MroNI GCCGGC 2 cut(s) 248, 297
MseI TTAA 2 cut(s) 38, 653
MspA1I CMGCKG 2 cut(s) 79, 336
MspI CCGG 9 cut(s) 48, 144, 192, 249, 264, 275, 298, 370, 402
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 4 cut(s) 85, 108, 504, 529
NaeI GCCGGC 2 cut(s) 250, 299
NdeII GATC 2 cut(s) 82, 414
NgoMIV GCCGGC 2 cut(s) 248, 297
NlaIV GGNNCC 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 13
PdiI GCCGGC 2 cut(s) 250, 299
PfeI GAWTC 1 cut(s) 484
PkrI GCNGC 7 cut(s) 285, 338, 351, 424, 522, 604, 627
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PsiI TTATAA 1 cut(s) 635
PspN4I GGNNCC 1 cut(s) 340
PspPI GGNCC 1 cut(s) 530
PstI CTGCAG 1 cut(s) 483
PvuII CAGCTG 1 cut(s) 79
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SaqAI TTAA 2 cut(s) 38, 653
SatI GCNGC 7 cut(s) 284, 337, 350, 423, 521, 603, 626
Sau3AI GATC 2 cut(s) 82, 414
Sau96I GGNCC 1 cut(s) 530
ScaI AGTACT 1 cut(s) 35
SchI GAGTC 1 cut(s) 21
SetI ASST 8 cut(s) 81, 90, 104, 141, 365, 559, 588, 619
SfcI CTRYAG 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 4 cut(s) 40, 117, 129, 184
TaqI TCGA 2 cut(s) 57, 566
TasI AATT 4 cut(s) 40, 117, 129, 184
TatI WGTACW 1 cut(s) 33
TauI GCSGC 4 cut(s) 339, 352, 425, 523
TfiI GAWTC 1 cut(s) 484
Tru1I TTAA 2 cut(s) 38, 653
Tru9I TTAA 2 cut(s) 38, 653
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 3 cut(s) 283, 602, 625
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 199
XapI RAATTY 2 cut(s) 40, 129
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.