Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0025037

Physical Location & Seq

Genomic Coordinates Forward (+)

19951477 .. 19951770

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG180300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAAAGGTGAATATGGAGGTGGTGACACCAAGAGTGAAACCCAAAACATGTTCTCGAAGCTTCACCATCATAACAACCCACAATCTCATCCTCACCCTCACCACCCCCAGCGGCAGTACCACCACCATTTCTCCAACCCGTTTCAGATAACCCCAGTCCGCGAATGTCAGCTCCAGACTTCTGAAGTCGTCCGCAGGCCCAGGGGCCGCCCTCCCGGCTCCAAGAACAAGCCCAAGCCGCCCGTCATCATAACCCGGGACACCGAGCCCGCCATGAGCCCTTACATTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

97

Amino Acids

11.2

Weight (kDa)

9.91

Isoelectric Point (pI)

63.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025037)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0025921
rosa_samantha	Rh5CG197900 Rh5DG180300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	162
AciI	CCGC	6 cut(s)	112, 160, 193, 208, 239, 270
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	1 cut(s)	119
AflIII	ACRYGT	1 cut(s)	48
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	2 cut(s)	61, 172
AluI	AGCT	2 cut(s)	61, 172
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	2 cut(s)	197, 205
AspS9I	GGNCC	2 cut(s)	198, 205
AsuC2I	CCSGG	3 cut(s)	216, 256, 257
AsuHPI	GGTGA	5 cut(s)	20, 35, 56, 86, 92
AvaI	CYCGRG	1 cut(s)	255
BanII	GRGCYC	2 cut(s)	270, 281
BccI	CCATC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	202
BcnI	CCSGG	3 cut(s)	216, 256, 257
BglI	GCCNNNNNGGC	1 cut(s)	216
BisI	GCNGC	3 cut(s)	113, 208, 239
BlsI	GCNGC	3 cut(s)	114, 209, 240
Bme1390I	CCNGG	4 cut(s)	202, 216, 256, 257
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	198, 205
BmiI	GGNNCC	2 cut(s)	206, 220
BmrFI	CCNGG	4 cut(s)	202, 216, 256, 257
BmrI	ACTGGG	1 cut(s)	149
BmuI	ACTGGG	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	158
BpuMI	CCSGG	3 cut(s)	216, 256, 257
BsaJI	CCNNGG	3 cut(s)	200, 201, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bse1I	ACTGG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	3 cut(s)	200, 201, 255
BseGI	GGATG	1 cut(s)	88
BseNI	ACTGG	1 cut(s)	155
BseYI	CCCAGC	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	199, 207
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	216, 256
BslFI	GGGAC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	2 cut(s)	199, 207
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	270, 281
BspACI	CCGC	6 cut(s)	112, 160, 193, 208, 239, 270
BspANI	GGCC	2 cut(s)	199, 207
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	2 cut(s)	206, 220
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	3 cut(s)	200, 201, 255
Bst2UI	CCWGG	1 cut(s)	202
BstC8I	GCNNGC	2 cut(s)	197, 270
BstF5I	GGATG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	2 cut(s)	216, 238
BstNI	CCWGG	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	4 cut(s)	200, 214, 254, 255
BstUI	CGCG	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	199, 207
BtsCI	GGATG	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	197, 270
Cfr13I	GGNCC	2 cut(s)	198, 205
Cfr9I	CCCGGG	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	2 cut(s)	49, 274
CviJI	RGCY	9 cut(s)	61, 172, 199, 207, 219, 232, 238, 268, 279
CviKI_1	RGCY	9 cut(s)	61, 172, 199, 207, 219, 232, 238, 268, 279
CviQI	GTAC	1 cut(s)	118
Eco24I	GRGCYC	2 cut(s)	270, 281
Eco57I	CTGAAG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	200
EcoT38I	GRGCYC	2 cut(s)	270, 281
FaeI	CATG	2 cut(s)	52, 277
FaiI	YATR	5 cut(s)	15, 50, 72, 251, 275
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	2 cut(s)	48, 273
FauI	CCCGC	1 cut(s)	277
Fnu4HI	GCNGC	3 cut(s)	113, 208, 239
FokI	GGATG	1 cut(s)	75
FriOI	GRGCYC	2 cut(s)	270, 281
Fsp4HI	GCNGC	3 cut(s)	113, 208, 239
GluI	GCNGC	3 cut(s)	113, 208, 239
GsaI	CCCAGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	199, 207
HapII	CCGG	2 cut(s)	216, 256
Hin1II	CATG	2 cut(s)	52, 277
HindIII	AAGCTT	1 cut(s)	59
HpaII	CCGG	2 cut(s)	216, 256
HphI	GGTGA	5 cut(s)	20, 35, 56, 86, 92
Hpy188I	TCNGA	2 cut(s)	147, 184
Hpy188III	TCNNGA	2 cut(s)	55, 175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	216, 238
Hsp92II	CATG	2 cut(s)	52, 277
LmnI	GCTCC	2 cut(s)	177, 224
LpnPI	CCDG	8 cut(s)	122, 168, 181, 187, 188, 214, 229, 269
MaeIII	GTNAC	1 cut(s)	23
MhlI	GDGCHC	2 cut(s)	270, 281
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	4 cut(s)	11, 102, 108, 222
MseI	TTAA	1 cut(s)	292
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	2 cut(s)	216, 256
MspR9I	CCNGG	4 cut(s)	202, 216, 256, 257
MvaI	CCWGG	1 cut(s)	202
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	216, 238
NciI	CCSGG	3 cut(s)	216, 256, 257
NlaIII	CATG	2 cut(s)	52, 277
NlaIV	GGNNCC	2 cut(s)	206, 220
NmuCI	GTSAC	1 cut(s)	23
NspI	RCATGY	1 cut(s)	52
PasI	CCCWGGG	1 cut(s)	201
PciI	ACATGT	1 cut(s)	48
PkrI	GCNGC	3 cut(s)	114, 209, 240
PscI	ACATGT	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	206, 220
PspPI	GGNCC	2 cut(s)	198, 205
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	292
SatI	GCNGC	3 cut(s)	113, 208, 239
Sau96I	GGNCC	2 cut(s)	198, 205
ScrFI	CCNGG	4 cut(s)	202, 216, 256, 257
SduI	GDGCHC	2 cut(s)	270, 281
SetI	ASST	4 cut(s)	10, 22, 63, 174
SmaI	CCCGGG	1 cut(s)	257
SsiI	CCGC	6 cut(s)	112, 160, 193, 208, 239, 270
StyD4I	CCNGG	4 cut(s)	200, 214, 254, 255
TaqI	TCGA	1 cut(s)	56
TauI	GCSGC	3 cut(s)	115, 210, 241
Tru1I	TTAA	1 cut(s)	292
Tru9I	TTAA	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	255
XceI	RCATGY	1 cut(s)	52
XmaI	CCCGGG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.