Rh5DG185200

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0030138
Physical Location & Seq
Forward (+)
20575060 .. 20575386
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG185200.1

Sequence Viewer

Length: 327 bp
ATGAAAGATGGGAGTGATAATGAGGCAGAGAATTTTCAGTGGCAAAGTTTTGATTACCCAGGTGACACATTCCTTCAATGTTTGAAGCTTGGCAGCACACAGTTACAAGCTTCAACTGGGATATATCATCATGGAAAAATCCACAGGATCCTTCTCAGGCAATTACACTATCAACTTGATCCCATTGGTTATCCAAAATTAATTTTGAGACAAGGTTCGGTCACAAAATTTGGGACTGGTCCAAGGAATGGAATCCGATTTAGTAAAACACCTCATTTGAGTCCAAACCCTCTATACACATATGGTCTTGTTTTTTTATCACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

108

Amino Acids

12.32

Weight (kDa)

9.56

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030138)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0026431
rosa_samantha Rh5DG185200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 248
AclWI GGATC 3 cut(s) 142, 155, 173
AcsI RAATTY 2 cut(s) 31, 227
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 3 cut(s) 77, 85, 114
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 2 cut(s) 88, 110
AluI AGCT 2 cut(s) 88, 110
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 3 cut(s) 142, 155, 173
ApeKI GCWGC 1 cut(s) 93
ApoI RAATTY 2 cut(s) 31, 227
AseI ATTAAT 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 74
AvaII GGWCC 1 cut(s) 239
BamHI GGATCC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 105
BccI CCATC 1 cut(s) 2
BciT130I CCWGG 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 202
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 60
BmrI ACTGGG 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 58, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 2 cut(s) 121, 241
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 58, 242
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMII CTCAG 1 cut(s) 169
BseNI ACTGG 2 cut(s) 121, 241
BseXI GCAGC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 247
Bsp143I GATC 2 cut(s) 147, 178
BspCNI CTCAG 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 149
BspPI GGATC 3 cut(s) 142, 155, 173
BsrI ACTGG 2 cut(s) 121, 241
BssECI CCNNGG 2 cut(s) 58, 242
BssMI GATC 2 cut(s) 147, 178
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 155
BstKTI GATC 2 cut(s) 150, 181
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 2 cut(s) 147, 178
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 239
CviAII CATG 1 cut(s) 131
CviJI RGCY 2 cut(s) 88, 110
CviKI_1 RGCY 2 cut(s) 88, 110
DdeI CTNAG 1 cut(s) 155
DpnI GATC 2 cut(s) 149, 180
DpnII GATC 2 cut(s) 147, 178
Eco130I CCWWGG 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 1 cut(s) 134
FaiI YATR 5 cut(s) 124, 132, 295, 301, 303
FaqI GGGAC 1 cut(s) 247
FatI CATG 1 cut(s) 130
FauNDI CATATG 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 94
Hin1II CATG 1 cut(s) 134
HindIII AAGCTT 2 cut(s) 86, 108
HinfI GANTC 2 cut(s) 252, 280
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 1 cut(s) 321
HpyAV CCTTC 2 cut(s) 83, 161
HpyCH4III ACNGT 1 cut(s) 102
HpyF3I CTNAG 1 cut(s) 155
Hsp92II CATG 1 cut(s) 134
Kzo9I GATC 2 cut(s) 147, 178
LpnPI CCDG 6 cut(s) 45, 72, 102, 130, 142, 222
Lsp1109I GCAGC 1 cut(s) 105
MaeIII GTNAC 3 cut(s) 62, 102, 220
MalI GATC 2 cut(s) 149, 180
MboI GATC 2 cut(s) 147, 178
MflI RGATCY 1 cut(s) 147
MluCI AATT 5 cut(s) 31, 161, 197, 201, 227
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 3 cut(s) 16, 282, 300
MseI TTAA 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
NdeI CATATG 1 cut(s) 301
NdeII GATC 2 cut(s) 147, 178
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 1 cut(s) 149
NmuCI GTSAC 2 cut(s) 62, 220
PfeI GAWTC 1 cut(s) 252
PflMI CCANNNNNTGG 1 cut(s) 248
PkrI GCNGC 1 cut(s) 95
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
PshBI ATTAAT 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 239
PsuI RGATCY 1 cut(s) 147
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 2 cut(s) 147, 178
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 60
SetI ASST 5 cut(s) 64, 90, 112, 217, 274
SinI GGWCC 1 cut(s) 239
Sse9I AATT 5 cut(s) 31, 161, 197, 201, 227
StyD4I CCNGG 1 cut(s) 58
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 102
TaqII GACCGA 1 cut(s) 208
TasI AATT 5 cut(s) 31, 161, 197, 201, 227
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 1 cut(s) 44
TseFI GTSAC 2 cut(s) 62, 220
TseI GCWGC 1 cut(s) 93
Tsp45I GTSAC 2 cut(s) 62, 220
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 44
Van91I CCANNNNNTGG 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 239
VspI ATTAAT 1 cut(s) 200
XapI RAATTY 2 cut(s) 31, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.