Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0030303

Physical Location & Seq

Genomic Coordinates Forward (+)

24709265 .. 24709465

Gene Structure 201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG219500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGAGGTTCATGCTTATTTTATATCTTTATATTACTCATTGGTCAATTCTTCAGCAGGTGGAGTCAATCTATCTAGACCCAAATACAATACCACCTTGTCATTCCTTAGGCTTGATATCGATGGCAATGTTAGGATTTACGCTTACGACGACAAGGTTGATTGGGGTGCATGGGAACTAACCTTCACTCTTTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

66

Amino Acids

7.63

Weight (kDa)

4.75

Isoelectric Point (pI)

25.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030303)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0031051
rosa_samantha	Rh5DG219500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	47
Acc36I	ACCTGC	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	36
AxyI	CCTNAGG	1 cut(s)	107
BccI	CCATC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	120
Bse21I	CCTNAGG	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	133
BseCI	ATCGAT	1 cut(s)	120
BseMI	GCAATG	1 cut(s)	133
BshVI	ATCGAT	1 cut(s)	120
BspDI	ATCGAT	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	107
Bsu15I	ATCGAT	1 cut(s)	120
Bsu36I	CCTNAGG	1 cut(s)	107
BsuTUI	ATCGAT	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	47
ClaI	ATCGAT	1 cut(s)	120
CviAII	CATG	2 cut(s)	11, 171
CviJI	RGCY	1 cut(s)	112
CviKI_1	RGCY	1 cut(s)	112
DdeI	CTNAG	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	107
EcoRV	GATATC	1 cut(s)	118
FaeI	CATG	2 cut(s)	14, 174
FaiI	YATR	4 cut(s)	12, 23, 31, 172
FatI	CATG	2 cut(s)	10, 170
FspBI	CTAG	1 cut(s)	75
Hin1II	CATG	2 cut(s)	14, 174
HinfI	GANTC	1 cut(s)	63
Hpy188III	TCNNGA	1 cut(s)	75
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	193
HpyCH4V	TGCA	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	14, 174
LpnPI	CCDG	1 cut(s)	42
MaeI	CTAG	1 cut(s)	75
MboII	GAAGA	1 cut(s)	42
MluCI	AATT	1 cut(s)	46
MlyI	GAGTC	1 cut(s)	72
NlaIII	CATG	2 cut(s)	14, 174
PaqCI	CACCTGC	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	72
SetI	ASST	5 cut(s)	9, 61, 98, 159, 185
SgeI	CNNG	7 cut(s)	23, 69, 87, 109, 125, 166, 183
Sse9I	AATT	1 cut(s)	46
SspMI	CTAG	1 cut(s)	75
TaqI	TCGA	2 cut(s)	120, 195
TasI	AATT	1 cut(s)	46
XbaI	TCTAGA	1 cut(s)	74
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.