Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0026428

Physical Location & Seq

Genomic Coordinates Forward (+)

48646267 .. 48651991

Gene Structure 5725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG351600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTGTGATTTTGATATTTTGGGCAGGGATTTAGGTAATTCAAACCTCTCTGGACATCTGGTACCTGAACTTGGAAAACTTGAGCATCTTCAATATCTGGAGCTTTACAGAAATAATATTCAGGGAACTATTCCAGCTGAGCTTGGTAACCTGAAGAGCCTCGTTAGCTTGGACTTATATAACAACAACATATCAGGAACAATTCCTCCTTCATTGGGGAAATTGAAATCACTTGTGTTCTTACGTCTCAATGACAACAGGTTAAGTGGGCCAATCCCCAGGGATCTCGTTGGTCTTGCAAGCCTCAAAGTTGTGGATGTATCGAGCAATGATTTGTGCGGAACAATTCCTACCAGTGGACCATTTGAGCACATTCCTTTGAGCAAGTACGTTCTTTCTGTTATTTGCCATGTTGCTCCTTTATCTAAGTTTACCTCACTATTTGATAAAGAATGGCTTCTCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

155

Amino Acids

16.98

Weight (kDa)

6.04

Isoelectric Point (pI)

26.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	15 - 107	1.8e-14	Leucine-rich repeat region
LRR_8	PF13855	24 - 64	5.7e-06	Leucine rich repeat
LRR_4	PF12799	29 - 69	1.5e-06	Leucine Rich repeats (2 copies)
LRR_4	PF12799	52 - 88	2.8e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	56 - 112	6e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0026428)

Species	Orthologous Gene IDs
rosa_samantha	Rh5BG339200 Rh5CG365000 Rh5DG351600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	61
AccB1I	GGYRCC	1 cut(s)	61
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	2 cut(s)	63, 389
AfiI	CCNNNNNNNGG	3 cut(s)	71, 215, 356
AgsI	TTSAA	3 cut(s)	42, 92, 226
AjnI	CCWGG	1 cut(s)	278
AloI	GAACNNNNNNTCC	2 cut(s)	190, 222
AluBI	AGCT	4 cut(s)	103, 137, 142, 168
AluI	AGCT	4 cut(s)	103, 137, 142, 168
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	1 cut(s)	291
AoxI	GGCC	1 cut(s)	269
Asp700I	GAANNNNTTC	1 cut(s)	456
Asp718I	GGTACC	1 cut(s)	61
AspS9I	GGNCC	2 cut(s)	269, 359
AvaII	GGWCC	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	372
BciT130I	CCWGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	251
BlpI	GCTNAGC	1 cut(s)	138
Bme1390I	CCNGG	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	269, 359
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	119
Bpu1102I	GCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	278, 279
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 215, 356
Bse1I	ACTGG	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	2 cut(s)	278, 279
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	3 cut(s)	71, 215, 356
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	354
BshFI	GGCC	1 cut(s)	271
BshNI	GGYRCC	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	372
BslI	CCNNNNNNNGG	3 cut(s)	71, 215, 356
BsmAI	GTCTC	1 cut(s)	251
BsmBI	CGTCTC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	283
Bsp1720I	GCTNAGC	1 cut(s)	138
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	63
BspPI	GGATC	1 cut(s)	291
BspQI	GCTCTTC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	2 cut(s)	278, 279
BssMI	GATC	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	2 cut(s)	138, 426
BstEII	GGTNACC	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNI	CCWGG	1 cut(s)	280
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	269, 359
Csp6I	GTAC	2 cut(s)	62, 388
CviAII	CATG	1 cut(s)	410
CviJI	RGCY	8 cut(s)	103, 137, 142, 159, 168, 271, 303, 457
CviKI_1	RGCY	8 cut(s)	103, 137, 142, 159, 168, 271, 303, 457
CviQI	GTAC	2 cut(s)	62, 388
DdeI	CTNAG	2 cut(s)	138, 426
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	173
Eco91I	GGTNACC	1 cut(s)	146
EcoO65I	GGTNACC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	278
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	1 cut(s)	413
FaiI	YATR	5 cut(s)	178, 180, 191, 411, 466
FalI	AAGNNNNNCTT	1 cut(s)	441
FatI	CATG	1 cut(s)	409
FokI	GGATG	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	271
Hin1II	CATG	1 cut(s)	413
Hpy166II	GTNNAC	2 cut(s)	359, 432
Hpy188III	TCNNGA	3 cut(s)	51, 98, 195
Hpy8I	GTNNAC	2 cut(s)	359, 432
HpyAV	CCTTC	1 cut(s)	219
HpyCH4IV	ACGT	2 cut(s)	244, 390
HpyCH4V	TGCA	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	2 cut(s)	138, 426
HpySE526I	ACGT	2 cut(s)	244, 390
Hsp92II	CATG	1 cut(s)	413
KpnI	GGTACC	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	283
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	2 cut(s)	100, 421
LweI	GCATC	1 cut(s)	94
MaeII	ACGT	2 cut(s)	244, 390
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	2 cut(s)	80, 166
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	4 cut(s)	37, 201, 221, 345
MnlI	CCTC	5 cut(s)	56, 170, 216, 314, 445
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	165
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	1 cut(s)	63
PasI	CCCWGGG	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	278
PspEI	GGTNACC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	269, 359
PsrI	GAACNNNNNNTAC	2 cut(s)	334, 366
PsuI	RGATCY	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	2 cut(s)	63, 389
RsaNI	GTAC	2 cut(s)	62, 388
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	263
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	2 cut(s)	269, 359
ScrFI	CCNGG	1 cut(s)	280
SduI	GDGCHC	1 cut(s)	372
SfaNI	GCATC	1 cut(s)	94
SinI	GGWCC	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	4 cut(s)	37, 201, 221, 345
SsiI	CCGC	1 cut(s)	339
SspI	AATATT	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	278
TaiI	ACGT	2 cut(s)	247, 393
TaqI	TCGA	1 cut(s)	323
TasI	AATT	4 cut(s)	37, 201, 221, 345
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	201
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	359
XmnI	GAANNNNTTC	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.