Rh5DG440500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0031024
Physical Location & Seq
Forward (+)
70599655 .. 70614869
15215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG440500.1

Sequence Viewer

Length: 432 bp
ATGGTGGATGTTCCAGAGTTCAAGGCCCCCCATTTCGGAGACGAATCGGAGCAACTCCCAAAGAAGTGCGCTACGGTTTCCGAGAGGAAAAAGTACGATGAGTGGCAGTTCGATTCCAACAAGAAGCCTCCTCACAGAGCTGGACTCAAAGCTGCTACTGCATTGCCCATTGCTTCTGAGCAATCTCAATTTGCCTCCAAACAAAACAGCAGGGTGTACCCTCGCCGGCGCCCTCGTTGTACTCTGGGAAATACTGGTCCACAATCTCGTGATACTCCGCCGAAAAGAGATACTGGTATTGCTAGTGAGAAGGAATGGGGTATGAGCTTGTTAAACGAACATGTGAAGGAATCCGACACTAAAGAAGATGGAAATACTTGGTACCAAGAAAACGGGGAGAAACTGAGGAACACTGAGTACAGATTTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.48

Weight (kDa)

9.07

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031024)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000472.1_g000005
rosa_samantha Rh5DG440500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 381
AccB1I GGYRCC 2 cut(s) 228, 381
AciI CCGC 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 229
AfaI GTAC 5 cut(s) 95, 218, 241, 383, 419
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 1 cut(s) 22
AluBI AGCT 3 cut(s) 140, 152, 327
AluI AGCT 3 cut(s) 140, 152, 327
Alw26I GTCTC 1 cut(s) 33
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 152
Asp718I GGTACC 1 cut(s) 381
AspLEI GCGC 2 cut(s) 71, 231
AspS9I GGNCC 2 cut(s) 25, 257
AvaII GGWCC 1 cut(s) 257
BanI GGYRCC 2 cut(s) 228, 381
BauI CACGAG 1 cut(s) 267
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 232
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 25, 257
BmiI GGNNCC 3 cut(s) 27, 230, 383
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BsaHI GRCGYC 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 259, 298
Bse3DI GCAATG 2 cut(s) 161, 168
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 2 cut(s) 161, 168
BseMII CTCAG 3 cut(s) 168, 395, 405
BseNI ACTGG 2 cut(s) 259, 298
BseRI GAGGAG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 26
BshNI GGYRCC 2 cut(s) 228, 381
BsiSI CCGG 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 33
BsmBI CGTCTC 1 cut(s) 33
BsnI GGCC 1 cut(s) 26
BspACI CCGC 1 cut(s) 278
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 3 cut(s) 169, 396, 406
BspLI GGNNCC 3 cut(s) 27, 230, 383
BspT107I GGYRCC 2 cut(s) 228, 381
BsrDI GCAATG 2 cut(s) 161, 168
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 2 cut(s) 259, 298
BssAI RCCGGY 1 cut(s) 225
BssNI GRCGYC 1 cut(s) 229
BssSI CACGAG 1 cut(s) 267
Bst2BI CACGAG 1 cut(s) 267
Bst4CI ACNGT 1 cut(s) 76
BstACI GRCGYC 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 3 cut(s) 177, 404, 414
BstF5I GGATG 1 cut(s) 13
BstH2I RGCGCY 1 cut(s) 232
BstHHI GCGC 2 cut(s) 71, 231
BstMAI GTCTC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 411
Cac8I GCNNGC 1 cut(s) 227
CfoI GCGC 2 cut(s) 71, 231
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 25, 257
Csp6I GTAC 5 cut(s) 94, 217, 240, 382, 418
CviAII CATG 1 cut(s) 341
CviJI RGCY 5 cut(s) 26, 127, 140, 152, 327
CviKI_1 RGCY 5 cut(s) 26, 127, 140, 152, 327
CviQI GTAC 5 cut(s) 94, 217, 240, 382, 418
DdeI CTNAG 3 cut(s) 177, 404, 414
DinI GGCGCC 1 cut(s) 230
EciI GGCGGA 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 25
EgeI GGCGCC 1 cut(s) 230
EheI GGCGCC 1 cut(s) 230
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 323, 342
FatI CATG 1 cut(s) 340
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 303
GlaI GCGC 2 cut(s) 70, 230
GluI GCNGC 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 232
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 226
HhaI GCGC 2 cut(s) 71, 231
Hin1I GRCGYC 1 cut(s) 229
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 2 cut(s) 69, 229
HinP1I GCGC 2 cut(s) 69, 229
HinfI GANTC 4 cut(s) 44, 113, 144, 350
HpaII CCGG 1 cut(s) 226
Hpy166II GTNNAC 2 cut(s) 217, 260
Hpy188I TCNGA 5 cut(s) 38, 49, 82, 178, 355
Hpy188III TCNNGA 2 cut(s) 14, 269
Hpy8I GTNNAC 2 cut(s) 217, 260
HpyAV CCTTC 2 cut(s) 304, 340
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 3 cut(s) 177, 404, 414
Hsp92I GRCGYC 1 cut(s) 229
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 2 cut(s) 69, 229
KasI GGCGCC 1 cut(s) 228
KpnI GGTACC 1 cut(s) 385
KroI GCCGGC 1 cut(s) 225
KroNI GCCGGC 1 cut(s) 227
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 7 cut(s) 27, 126, 196, 230, 239, 240, 279
Lsp1109I GCAGC 1 cut(s) 139
MaeI CTAG 1 cut(s) 303
MboII GAAGA 1 cut(s) 377
MluCI AATT 1 cut(s) 188
Mly113I GGCGCC 1 cut(s) 229
MlyI GAGTC 1 cut(s) 138
MmeI TCCRAC 2 cut(s) 141, 378
MnlI CCTC 7 cut(s) 78, 138, 141, 205, 231, 243, 399
MreI CGCCGGCG 1 cut(s) 225
MroNI GCCGGC 1 cut(s) 225
MseI TTAA 1 cut(s) 332
MspI CCGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 158
NaeI GCCGGC 1 cut(s) 227
NarI GGCGCC 1 cut(s) 229
NgoMIV GCCGGC 1 cut(s) 225
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 3 cut(s) 27, 230, 383
NspI RCATGY 1 cut(s) 344
PciI ACATGT 1 cut(s) 340
PdiI GCCGGC 1 cut(s) 227
PfeI GAWTC 3 cut(s) 44, 113, 350
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 138
PluTI GGCGCC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 138
PscI ACATGT 1 cut(s) 340
PspN4I GGNNCC 3 cut(s) 27, 230, 383
PspPI GGNCC 2 cut(s) 25, 257
PsrI GAACNNNNNNTAC 1 cut(s) 401
RsaI GTAC 5 cut(s) 95, 218, 241, 383, 419
RsaNI GTAC 5 cut(s) 94, 217, 240, 382, 418
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 1 cut(s) 153
Sau96I GGNCC 2 cut(s) 25, 257
SchI GAGTC 1 cut(s) 138
SetI ASST 4 cut(s) 142, 154, 329, 431
SfoI GGCGCC 1 cut(s) 230
SgrAI CRCCGGYG 1 cut(s) 225
SinI GGWCC 1 cut(s) 257
Sse9I AATT 1 cut(s) 188
SsiI CCGC 1 cut(s) 278
SspDI GGCGCC 1 cut(s) 228
SspMI CTAG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 1 cut(s) 111
TasI AATT 1 cut(s) 188
TatI WGTACW 2 cut(s) 239, 417
TfiI GAWTC 3 cut(s) 44, 113, 350
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 1 cut(s) 418
TseI GCWGC 1 cut(s) 152
TspRI CASTG 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 257
XceI RCATGY 1 cut(s) 344
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.