Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0031108

Physical Location & Seq

Genomic Coordinates Reverse (-)

19228718 .. 19229089

Gene Structure 372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG127300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTTTGTGCGAGTGCTGAACCCTAATGCGGATGTGCTGAACAAATCGGCGACCCTACACATGAACATCAACGCCGCCAAGGGCTTGCAGGATGTGCTCAAAACCAACCTCGACCCCAAAGGCACCATCAAAATGCTCGTCGGTGGCTCTGGAGGCATAAAGCTCACTAAAGATGGCAACACTCTCCTCAAAGAAATGCATATCCAAAACCCCACAGCAATTATGATTGCCAGGACAGCTGTTGCCCAAGATGACATAAGCGGGGATGGCACCACAGGATTCATTGGCGAGCTTATGAAACAATCCGAACGATTCATTGATGAAGATTGGTTTGCCCATCCTATTACTTTTTATTTTTTGGAATTCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

123

Amino Acids

13.54

Weight (kDa)

5.85

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	29 - 109	4.1e-23	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0031108)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000957.1_g000006
rosa_samantha	Rh6AG127300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	122, 269
AciI	CCGC	3 cut(s)	29, 75, 261
AcsI	RAATTY	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	163, 239, 292
AluI	AGCT	3 cut(s)	163, 239, 292
Alw21I	GWGCWC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	362
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
BanI	GGYRCC	2 cut(s)	122, 269
Bbv12I	GWGCWC	1 cut(s)	99
BccI	CCATC	4 cut(s)	134, 167, 260, 345
BciT130I	CCWGG	1 cut(s)	232
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	124, 271
BmrFI	CCNGG	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	4 cut(s)	37, 97, 271, 337
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	176
BshNI	GGYRCC	2 cut(s)	122, 269
BsiHKAI	GWGCWC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	99
BspACI	CCGC	3 cut(s)	29, 75, 261
BspLI	GGNNCC	2 cut(s)	124, 271
BspT107I	GGYRCC	2 cut(s)	122, 269
BssECI	CCNNGG	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	232
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	86, 290
BstF5I	GGATG	4 cut(s)	37, 97, 271, 337
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 153, 236, 267
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BtsCI	GGATG	4 cut(s)	37, 97, 271, 337
Cac8I	GCNNGC	2 cut(s)	86, 290
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	5 cut(s)	84, 147, 163, 239, 292
CviKI_1	RGCY	5 cut(s)	84, 147, 163, 239, 292
Eco130I	CCWWGG	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	64
FaiI	YATR	7 cut(s)	62, 158, 201, 224, 257, 296, 370
FatI	CATG	1 cut(s)	60
FauI	CCCGC	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	4 cut(s)	44, 104, 278, 324
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	171
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	2 cut(s)	279, 312
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	1 cut(s)	150
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4V	TGCA	2 cut(s)	88, 199
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 153, 236, 267
Hsp92II	CATG	1 cut(s)	64
LpnPI	CCDG	5 cut(s)	74, 135, 217, 244, 261
MboII	GAAGA	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	2 cut(s)	219, 362
MnlI	CCTC	3 cut(s)	119, 146, 197
Mph1103I	ATGCAT	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	4 cut(s)	94, 153, 236, 267
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	2 cut(s)	124, 271
NsiI	ATGCAT	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	279, 312
PkrI	GCNGC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	124, 271
PvuII	CAGCTG	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	131
SatI	GCNGC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	4 cut(s)	111, 165, 241, 294
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	219, 362
SsiI	CCGC	3 cut(s)	29, 75, 261
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	78
TaqI	TCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	219, 362
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	279, 312
TspDTI	ATGAA	5 cut(s)	77, 271, 304, 311, 336
XapI	RAATTY	1 cut(s)	362
Zsp2I	ATGCAT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.