Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0029728

Physical Location & Seq

Genomic Coordinates Reverse (-)

20793860 .. 20794203

Gene Structure 344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG136500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCTCTTAAAGCTTTAGAATCTGGTTTTATCCTTCAGTTCCAAGATGGAAATATAGGCAGTTCTCTAGCAATAACAGTGGCAACTCCAACTGAACTTGTAAAAGTTAGACTTCGAGCTGAGAGAAAATTACCACCAGGCGCACAAAGGCGCTATTCTGGCACATTGAATGCGTCTTCCACCATCTTGAGACAAGTTGTGATTGATGGCTTAAGAGATCGAAAGATTGCTTATCAGCTTTGCCTACAAGAGAGCTTCTGCAAGAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

90

Amino Acids

9.94

Weight (kDa)

10.02

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0029728)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0147221
rosa_samantha	Rh6AG136500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	20
AflII	CTTAAG	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	4 cut(s)	14, 119, 238, 255
AluI	AGCT	4 cut(s)	14, 119, 238, 255
Alw26I	GTCTC	1 cut(s)	184
AspLEI	GCGC	2 cut(s)	143, 153
BbsI	GAAGAC	1 cut(s)	168
BccI	CCATC	3 cut(s)	41, 191, 200
BciT130I	CCWGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	68
BfoI	RGCGCY	1 cut(s)	154
BfrI	CTTAAG	1 cut(s)	211
Bme1390I	CCNGG	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	217
BspCNI	CTCAG	1 cut(s)	112
BspTI	CTTAAG	1 cut(s)	211
BssMI	GATC	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	79
BstAFI	CTTAAG	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	2 cut(s)	143, 153
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 159
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	84
CfoI	GCGC	2 cut(s)	143, 153
CseI	GACGC	1 cut(s)	162
CspCI	CAANNNNNGTGG	2 cut(s)	60, 95
CviJI	RGCY	6 cut(s)	5, 14, 119, 210, 238, 255
CviKI_1	RGCY	6 cut(s)	5, 14, 119, 210, 238, 255
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	136
FaiI	YATR	1 cut(s)	56
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	2 cut(s)	142, 152
HaeII	RGCGCY	1 cut(s)	154
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	2 cut(s)	143, 153
Hin6I	GCGC	2 cut(s)	141, 151
HinP1I	GCGC	2 cut(s)	141, 151
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	1 cut(s)	20
Hpy188III	TCNNGA	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 159
HpyF3I	CTNAG	1 cut(s)	120
HspAI	GCGC	2 cut(s)	141, 151
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	4 cut(s)	9, 123, 144, 150
MaeI	CTAG	1 cut(s)	68
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	168
MluCI	AATT	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	113
MseI	TTAA	2 cut(s)	9, 212
MspCI	CTTAAG	1 cut(s)	211
MspR9I	CCNGG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	11, 159
NdeII	GATC	1 cut(s)	217
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
SaqAI	TTAA	2 cut(s)	9, 212
Sau3AI	GATC	1 cut(s)	217
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	4 cut(s)	16, 121, 240, 257
SmlI	CTYRAG	2 cut(s)	187, 211
SmoI	CTYRAG	2 cut(s)	187, 211
Sse9I	AATT	1 cut(s)	128
SspMI	CTAG	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	79
TaqI	TCGA	2 cut(s)	115, 220
TasI	AATT	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	9, 212
Tru9I	TTAA	2 cut(s)	9, 212
TscAI	CASTG	1 cut(s)	84
TspRI	CASTG	1 cut(s)	84
Vha464I	CTTAAG	1 cut(s)	211
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.