Rh6AG480000

Coiled-coil domain containing protein (DUF2052)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0030336
Physical Location & Seq
Forward (+)
66149282 .. 66150198
917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG480000.1

Sequence Viewer

Length: 162 bp
ATGGACCAGTTCACCTACATCATGCATGAGAAATTTTTGTTAGGAGAAGATCACGAGTACTTAGATTACTCAAAGATAGACAACGACGAGACATTGGATGATCACTGGCAGCAGAGAGAAGCCAACCATGACGCTGAAGAGAAGTACTTTGATGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2052

Protein Analysis

53

Amino Acids

6.61

Weight (kDa)

4.19

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCD97-like_C PF09747 2 - 53 7.1e-16 Coiled-coil domain containing protein 97-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0030336)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0308851
rosa_samantha Rh6AG480000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 2 cut(s) 59, 146
Alw26I GTCTC 1 cut(s) 83
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 53
BbvI GCAGC 1 cut(s) 121
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 83
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
BmcAI AGTACT 2 cut(s) 59, 146
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
Bse1I ACTGG 2 cut(s) 7, 110
BseGI GGATG 1 cut(s) 103
BseNI ACTGG 2 cut(s) 7, 110
BseXI GCAGC 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 49, 100
BsrI ACTGG 2 cut(s) 7, 110
BssMI GATC 2 cut(s) 49, 100
BssSI CACGAG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 61
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 2 cut(s) 52, 103
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 2 cut(s) 49, 100
BstV1I GCAGC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 140
Csp6I GTAC 2 cut(s) 58, 145
CviAII CATG 3 cut(s) 22, 26, 128
CviJI RGCY 1 cut(s) 122
CviKI_1 RGCY 1 cut(s) 122
CviQI GTAC 2 cut(s) 58, 145
DdeI CTNAG 1 cut(s) 61
DpnI GATC 2 cut(s) 51, 102
DpnII GATC 2 cut(s) 49, 100
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 27
FaeI CATG 3 cut(s) 25, 29, 131
FaiI YATR 3 cut(s) 23, 27, 129
FatI CATG 3 cut(s) 21, 25, 127
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 110
FspEI CC 8 cut(s) 20, 27, 28, 80, 91, 136, 140, 140
GluI GCNGC 1 cut(s) 110
HgaI GACGC 1 cut(s) 140
Hin1II CATG 3 cut(s) 25, 29, 131
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 12
Hpy99I CGWCG 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 25
HpyF3I CTNAG 1 cut(s) 61
Hsp92II CATG 3 cut(s) 25, 29, 131
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 2 cut(s) 49, 100
LpnPI CCDG 2 cut(s) 20, 91
Lsp1109I GCAGC 1 cut(s) 121
MalI GATC 2 cut(s) 51, 102
MboI GATC 2 cut(s) 49, 100
MboII GAAGA 2 cut(s) 59, 149
MluCI AATT 1 cut(s) 32
MnlI CCTC 1 cut(s) 148
Mph1103I ATGCAT 1 cut(s) 27
MseI TTAA 1 cut(s) 160
NdeII GATC 2 cut(s) 49, 100
NlaIII CATG 3 cut(s) 25, 29, 131
NsiI ATGCAT 1 cut(s) 27
PkrI GCNGC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 2 cut(s) 59, 146
RsaNI GTAC 2 cut(s) 58, 145
SaqAI TTAA 1 cut(s) 160
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 2 cut(s) 49, 100
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 2 cut(s) 59, 146
SetI ASST 1 cut(s) 17
SgeI CNNG 8 cut(s) 19, 34, 38, 65, 67, 100, 118, 140
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 32
TasI AATT 1 cut(s) 32
TatI WGTACW 2 cut(s) 57, 144
Tru1I TTAA 1 cut(s) 160
Tru9I TTAA 1 cut(s) 160
TscAI CASTG 1 cut(s) 110
TseI GCWGC 1 cut(s) 109
TspRI CASTG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 32
ZrmI AGTACT 2 cut(s) 59, 146
Zsp2I ATGCAT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.