Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0026368

Physical Location & Seq

Genomic Coordinates Forward (+)

33943773 .. 33944347

Gene Structure 575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG185000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGATCAAAGAAATTGATCAGGATAATGATGGGCGTATTGACTATGGGGAGTTTGCTGCAATGATGAAGAAGGGTGGTGATCATGGTACTATAGGGAGGAACAGAACTGCTTCTCGCAATTTGAACTTTAATTTGGCTGATGCTTTTGGAATAAAAGAGTCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009787 GO:0009789 GO:0009931 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0010769 GO:0010857 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0022898 GO:0023051 GO:0023052 GO:0023056 GO:0032409 GO:0032412 GO:0032879 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045595 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0060284 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080092 GO:0140096 GO:1901016 GO:1901379 GO:1901419 GO:1901421 GO:1901564 GO:1901979 GO:1904062 GO:1905957 GO:1905959 GO:2000241 GO:2001257

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

55

Amino Acids

6.09

Weight (kDa)

5.63

Isoelectric Point (pI)

13.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	1 - 24	5.8e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0026368)

Species	Orthologous Gene IDs
rosa_samantha	Rh6BG185000 Rh6CG183400 Rh6DG174900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	124
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
ApeKI	GCWGC	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	23
BclI	TGATCA	3 cut(s)	3, 16, 79
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmsI	GCATC	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	3, 16, 79
BsrDI	GCAATG	1 cut(s)	66
BssMI	GATC	3 cut(s)	3, 16, 79
BstKTI	GATC	3 cut(s)	6, 19, 82
BstMBI	GATC	3 cut(s)	3, 16, 79
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	2 cut(s)	83, 165
CviJI	RGCY	1 cut(s)	137
CviKI_1	RGCY	1 cut(s)	137
CviQI	GTAC	1 cut(s)	87
DpnI	GATC	3 cut(s)	5, 18, 81
DpnII	GATC	3 cut(s)	3, 16, 79
FaeI	CATG	2 cut(s)	86, 168
FaiI	YATR	4 cut(s)	45, 84, 92, 166
FatI	CATG	2 cut(s)	82, 164
FbaI	TGATCA	3 cut(s)	3, 16, 79
FblI	GTMKAC	1 cut(s)	161
Fnu4HI	GCNGC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	86, 168
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	86, 168
Ksp22I	TGATCA	3 cut(s)	3, 16, 79
Kzo9I	GATC	3 cut(s)	3, 16, 79
LpnPI	CCDG	1 cut(s)	5
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	130
MalI	GATC	3 cut(s)	5, 18, 81
MboI	GATC	3 cut(s)	3, 16, 79
MboII	GAAGA	1 cut(s)	79
MluCI	AATT	3 cut(s)	12, 118, 130
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	1 cut(s)	90
MroXI	GAANNNNTTC	1 cut(s)	109
MseI	TTAA	1 cut(s)	129
NdeII	GATC	3 cut(s)	3, 16, 79
NlaIII	CATG	2 cut(s)	86, 168
PdmI	GAANNNNTTC	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	3, 16, 79
SchI	GAGTC	1 cut(s)	167
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	1 cut(s)	90
SgeI	CNNG	3 cut(s)	32, 95, 126
Sse9I	AATT	3 cut(s)	12, 118, 130
TasI	AATT	3 cut(s)	12, 118, 130
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.