Rh6BG191700

Methyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0030330
Physical Location & Seq
Forward (+)
35733855 .. 35794149
60295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG191700.1

Sequence Viewer

Length: 435 bp
ATGGATTTTACTGTGATCAATTCACCCCAAATTCTAACAGCACACCCAAAATGTGGACCGAGAATTGGAGTGGATGGTAAGGAGCCTTTGGGGACTCCACTCATTAGCAAGGCCGCCCAGTGTGAGGGGACTCTACTCATTAGGAAATATCCACTTTTTAAGATATACTGTCTTTCTGGATTATGTTGCCTGGGTCCTAAGCCTCCGAAGGATACAAATCTCCATGGAATATGGAAGAAAGTTCAACATTTTGCTCCAAAATGGGGTCATCTAAAAGATGTGCATAAAGCGATAAAGCTTTGTGAAGCTGCAATGGTGGCCACTGACCCAACAGTTTCTTTTCTTGTCTTATTTTGGATTAGAAGATTCAATCCATTCCGAATCGATGGCTGGAAATATGAGAGTGCTTTTGGGGGTTATGACTTTGGGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_32

Protein Analysis

144

Amino Acids

16.13

Weight (kDa)

9.3

Isoelectric Point (pI)

18.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030330)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0273061
rosa_samantha Rh6BG191700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 53
AciI CCGC 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 1 cut(s) 30
AfiI CCNNNNNNNGG 4 cut(s) 53, 65, 124, 263
AgsI TTSAA 2 cut(s) 245, 370
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 2 cut(s) 298, 308
AluI AGCT 2 cut(s) 298, 308
AoxI GGCC 3 cut(s) 111, 318, 428
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 30
AspS9I GGNCC 3 cut(s) 56, 194, 428
AsuHPI GGTGA 1 cut(s) 15
AvaII GGWCC 2 cut(s) 56, 194
BalI TGGCCA 1 cut(s) 320
BbvI GCAGC 1 cut(s) 295
BccI CCATC 2 cut(s) 68, 380
BciT130I CCWGG 1 cut(s) 191
BciVI GTATCC 1 cut(s) 205
BclI TGATCA 1 cut(s) 15
BfuI GTATCC 1 cut(s) 205
BisI GCNGC 2 cut(s) 114, 309
BlsI GCNGC 2 cut(s) 115, 310
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 2 cut(s) 56, 194
BmgT120I GGNCC 3 cut(s) 56, 194, 428
BmiI GGNNCC 2 cut(s) 84, 195
BmrFI CCNGG 1 cut(s) 191
BmrI ACTGGG 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 198
Bsa29I ATCGAT 1 cut(s) 384
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 190, 223
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 65, 124, 263
Bse1I ACTGG 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 318
Bse8I GATNNNNATC 1 cut(s) 216
BseBI CCWGG 1 cut(s) 191
BseCI ATCGAT 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 190, 223
BseGI GGATG 1 cut(s) 79
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 4 cut(s) 53, 65, 124, 263
BseMI GCAATG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 295
BshFI GGCC 3 cut(s) 113, 320, 430
BshVI ATCGAT 1 cut(s) 384
BslFI GGGAC 2 cut(s) 106, 142
BslI CCNNNNNNNGG 4 cut(s) 53, 65, 124, 263
BsmFI GGGAC 2 cut(s) 106, 142
BsnI GGCC 3 cut(s) 113, 320, 430
Bsp143I GATC 1 cut(s) 15
Bsp19I CCATGG 1 cut(s) 223
BspACI CCGC 1 cut(s) 114
BspANI GGCC 3 cut(s) 113, 320, 430
BspDI ATCGAT 1 cut(s) 384
BspLI GGNNCC 2 cut(s) 84, 195
BsrDI GCAATG 1 cut(s) 318
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 190, 223
BssMI GATC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 3 cut(s) 13, 170, 334
BstDEI CTNAG 1 cut(s) 198
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 295
Bsu15I ATCGAT 1 cut(s) 384
BsuI GTATCC 1 cut(s) 205
BsuRI GGCC 3 cut(s) 113, 320, 430
BsuTUI ATCGAT 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 2 cut(s) 125, 321
Cfr13I GGNCC 3 cut(s) 56, 194, 428
ClaI ATCGAT 1 cut(s) 384
CviAII CATG 1 cut(s) 224
CviJI RGCY 8 cut(s) 85, 113, 202, 298, 308, 320, 390, 430
CviKI_1 RGCY 8 cut(s) 85, 113, 202, 298, 308, 320, 390, 430
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 223
Eco47I GGWCC 2 cut(s) 56, 194
EcoO109I RGGNCCY 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 1 cut(s) 227
FaiI YATR 7 cut(s) 166, 184, 225, 232, 285, 399, 420
FaqI GGGAC 2 cut(s) 106, 142
FatI CATG 1 cut(s) 223
FbaI TGATCA 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 114, 309
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 2 cut(s) 114, 309
GluI GCNGC 2 cut(s) 114, 309
HaeIII GGCC 3 cut(s) 113, 320, 430
Hin1II CATG 1 cut(s) 227
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 4 cut(s) 94, 130, 366, 381
HphI GGTGA 1 cut(s) 15
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 2 cut(s) 207, 380
Hpy188III TCNNGA 1 cut(s) 177
Hpy8I GTNNAC 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 3 cut(s) 13, 170, 334
HpyCH4V TGCA 2 cut(s) 283, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 2 cut(s) 82, 259
LpnPI CCDG 5 cut(s) 131, 162, 176, 203, 376
Lsp1109I GCAGC 1 cut(s) 295
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 2 cut(s) 247, 375
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 3 cut(s) 19, 30, 63
MluNI TGGCCA 1 cut(s) 320
MlyI GAGTC 2 cut(s) 88, 124
MnlI CCTC 2 cut(s) 118, 213
Mox20I TGGCCA 1 cut(s) 320
MscI TGGCCA 1 cut(s) 320
MseI TTAA 2 cut(s) 159, 433
Msp20I TGGCCA 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 317
NcoI CCATGG 1 cut(s) 223
NdeII GATC 1 cut(s) 15
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 2 cut(s) 84, 195
PfeI GAWTC 2 cut(s) 366, 381
PflMI CCANNNNNTGG 1 cut(s) 53
PkrI GCNGC 2 cut(s) 115, 310
PleI GAGTC 2 cut(s) 88, 124
PpsI GAGTC 2 cut(s) 88, 124
PpuMI RGGWCCY 1 cut(s) 194
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 2 cut(s) 84, 195
PspPI GGNCC 3 cut(s) 56, 194, 428
PspPPI RGGWCCY 1 cut(s) 194
SaqAI TTAA 2 cut(s) 159, 433
SatI GCNGC 2 cut(s) 114, 309
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 3 cut(s) 56, 194, 428
SchI GAGTC 2 cut(s) 88, 124
ScrFI CCNGG 1 cut(s) 191
SetI ASST 2 cut(s) 300, 310
SgeI CNNG 9 cut(s) 72, 121, 130, 189, 202, 203, 236, 356, 403
SinI GGWCC 2 cut(s) 56, 194
Sse9I AATT 3 cut(s) 19, 30, 63
SsiI CCGC 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 3 cut(s) 13, 170, 334
TaqI TCGA 1 cut(s) 384
TaqII GACCGA 1 cut(s) 73
TasI AATT 3 cut(s) 19, 30, 63
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 2 cut(s) 366, 381
Tru1I TTAA 2 cut(s) 159, 433
Tru9I TTAA 2 cut(s) 159, 433
TscAI CASTG 2 cut(s) 125, 328
TseI GCWGC 1 cut(s) 308
TspRI CASTG 2 cut(s) 125, 328
Van91I CCANNNNNTGG 1 cut(s) 53
VpaK11BI GGWCC 2 cut(s) 56, 194
XapI RAATTY 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.