Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0034602

Physical Location & Seq

Genomic Coordinates Forward (+)

70364158 .. 70364337

Gene Structure 180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG505900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGAGCCGGAGGTTCTGTACCGGGTCGGGTGCGACAGATCCAAGGCTGACGCGTGGTCCTGCGACGTCATCCTCTTCGTTCTCTTCGCCGGACAGTTGCCCACGACGCCGGGTCTTTCTCTCCCCGTCGCCACATGGATCTACCACCATCGCTGTCGTCGTGCCATGGCAGTGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03060 ko03070 ko04113 ko04138 map03060 map03070 map04113 map04138

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

59

Amino Acids

6.62

Weight (kDa)

7.76

Isoelectric Point (pI)

52.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0034602)

Species	Orthologous Gene IDs
rosa_samantha	Rh6BG505900 Rh7BG371200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	69
AccII	CGCG	1 cut(s)	53
AclWI	GGATC	2 cut(s)	33, 146
AcyI	GRCGYC	2 cut(s)	66, 107
AfaI	GTAC	1 cut(s)	20
AflIII	ACRYGT	1 cut(s)	51
AhdI	GACNNNNNGTC	2 cut(s)	55, 111
AlwI	GGATC	2 cut(s)	33, 146
AspS9I	GGNCC	1 cut(s)	57
AsuC2I	CCSGG	2 cut(s)	23, 111
AvaII	GGWCC	1 cut(s)	57
BccI	CCATC	1 cut(s)	156
BcnI	CCSGG	2 cut(s)	23, 111
Bme1390I	CCNGG	2 cut(s)	23, 111
Bme18I	GGWCC	1 cut(s)	57
BmeRI	GACNNNNNGTC	2 cut(s)	55, 111
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	23, 111
BpuMI	CCSGG	2 cut(s)	23, 111
BsaHI	GRCGYC	2 cut(s)	66, 107
BsaJI	CCNNGG	2 cut(s)	42, 165
BsaXI	ACNNNNNCTCC	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	42, 165
BseGI	GGATG	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	53
BsiSI	CCGG	4 cut(s)	8, 22, 90, 110
Bsp143I	GATC	2 cut(s)	38, 138
Bsp19I	CCATGG	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	33, 146
BssECI	CCNNGG	2 cut(s)	42, 165
BssMI	GATC	2 cut(s)	38, 138
BssNI	GRCGYC	2 cut(s)	66, 107
BssT1I	CCWWGG	2 cut(s)	42, 165
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	2 cut(s)	80, 89
BstACI	GRCGYC	2 cut(s)	66, 107
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	2 cut(s)	41, 141
BstMBI	GATC	2 cut(s)	38, 138
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	21, 109
BstUI	CGCG	1 cut(s)	53
BstX2I	RGATCY	2 cut(s)	38, 138
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstYI	RGATCY	2 cut(s)	38, 138
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	57
CseI	GACGC	2 cut(s)	59, 115
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	2 cut(s)	135, 166
CviJI	RGCY	2 cut(s)	7, 47
CviKI_1	RGCY	2 cut(s)	7, 47
CviQI	GTAC	1 cut(s)	19
DpnI	GATC	2 cut(s)	40, 140
DpnII	GATC	2 cut(s)	38, 138
DriI	GACNNNNNGTC	2 cut(s)	55, 111
Eam1104I	CTCTTC	2 cut(s)	80, 89
Eam1105I	GACNNNNNGTC	2 cut(s)	55, 111
EarI	CTCTTC	2 cut(s)	80, 89
Eco130I	CCWWGG	2 cut(s)	42, 165
Eco47I	GGWCC	1 cut(s)	57
EcoT14I	CCWWGG	2 cut(s)	42, 165
ErhI	CCWWGG	2 cut(s)	42, 165
FaeI	CATG	2 cut(s)	138, 169
FaiI	YATR	2 cut(s)	136, 167
FatI	CATG	2 cut(s)	134, 165
FokI	GGATG	1 cut(s)	56
HapII	CCGG	4 cut(s)	8, 22, 90, 110
HgaI	GACGC	2 cut(s)	59, 115
Hin1I	GRCGYC	2 cut(s)	66, 107
Hin1II	CATG	2 cut(s)	138, 169
HpaII	CCGG	4 cut(s)	8, 22, 90, 110
Hpy99I	CGWCG	4 cut(s)	68, 109, 131, 162
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4IV	ACGT	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	2 cut(s)	66, 107
Hsp92II	CATG	2 cut(s)	138, 169
Kzo9I	GATC	2 cut(s)	38, 138
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	21, 35, 73, 103, 123
MaeII	ACGT	1 cut(s)	66
MalI	GATC	2 cut(s)	40, 140
MboI	GATC	2 cut(s)	38, 138
MboII	GAAGA	2 cut(s)	67, 76
MflI	RGATCY	2 cut(s)	38, 138
MluI	ACGCGT	1 cut(s)	51
MnlI	CCTC	2 cut(s)	4, 83
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	4 cut(s)	8, 22, 90, 110
MspR9I	CCNGG	2 cut(s)	23, 111
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	106
NciI	CCSGG	2 cut(s)	23, 111
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	2 cut(s)	38, 138
NlaIII	CATG	2 cut(s)	138, 169
NlaIV	GGNNCC	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	57
PsuI	RGATCY	2 cut(s)	38, 138
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	170
Sau3AI	GATC	2 cut(s)	38, 138
Sau96I	GGNCC	1 cut(s)	57
ScrFI	CCNGG	2 cut(s)	23, 111
SetI	ASST	2 cut(s)	15, 69
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	21, 109
StyI	CCWWGG	2 cut(s)	42, 165
TaaI	ACNGT	1 cut(s)	96
TaiI	ACGT	1 cut(s)	69
TscAI	CASTG	1 cut(s)	177
TspRI	CASTG	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	57
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.