Rh6CG162500
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
21953766 .. 21959882
6117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG162500.1

Sequence Viewer

Length: 351 bp
ATGGGGACTGATGTGAATGAGAAATGGAGGAAGAGCCAATTGTTGTTGGGTATTGCAAGGAAGATGGTTATGATTGATAGGACAAAGGGCAAAAGGGGTTCATTGGAGGTTTCGGCGACAGAGATGAAGAGATGGACGCCCGGTGACTTTGATATTGGAAAGCCTCTGGGACATCGAAAGTTTAGTCATGTCTATTTGGCAAGAGAGAAGAGGGTGTCATGGATACCTATCTACCTCTTAATAAATTGGCTATGCATTTGGTTAATCACAATGACAAGCATTGAACCTTTTGTGAGCTGTTGCACTTTGACTTGCCACAAGCCCTGGAAGACAAGTATAAAGGCTACTTGA

Protein Analysis

116

Amino Acids

13.48

Weight (kDa)

9.92

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0022646)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0153401 RchiOBHm_Chr5g0032681 RchiOBHm_Chr5g0072161
rosa_samantha Rh6CG162500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 137
AgsI TTSAA 1 cut(s) 284
AjnI CCWGG 1 cut(s) 323
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
ArsI GACNNNNNNTTYG 2 cut(s) 169, 201
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 335
BccI CCATC 2 cut(s) 58, 126
BciT130I CCWGG 1 cut(s) 325
BciVI GTATCC 1 cut(s) 216
BcnI CCSGG 1 cut(s) 141
BfuI GTATCC 1 cut(s) 216
Bme1390I CCNGG 2 cut(s) 141, 325
BmrFI CCNGG 2 cut(s) 141, 325
BpiI GAAGAC 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 323
Bse8I GATNNNNATC 1 cut(s) 227
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 323
BseJI GATNNNNATC 1 cut(s) 227
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 2 cut(s) 19, 183
BsmFI GGGAC 2 cut(s) 19, 183
BspQI GCTCTTC 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 323
BssNI GRCGYC 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 325
Bst6I CTCTTC 3 cut(s) 26, 122, 203
BstACI GRCGYC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 139, 323
BstV2I GAAGAC 1 cut(s) 335
BsuI GTATCC 1 cut(s) 216
CseI GACGC 1 cut(s) 145
CviAII CATG 2 cut(s) 188, 219
CviJI RGCY 6 cut(s) 36, 163, 250, 297, 322, 344
CviKI_1 RGCY 6 cut(s) 36, 163, 250, 297, 322, 344
Eam1104I CTCTTC 3 cut(s) 26, 122, 203
EarI CTCTTC 3 cut(s) 26, 122, 203
EcoRII CCWGG 1 cut(s) 323
EcoT22I ATGCAT 1 cut(s) 257
FaeI CATG 2 cut(s) 191, 222
FaiI YATR 5 cut(s) 71, 189, 220, 253, 338
FaqI GGGAC 2 cut(s) 19, 183
FatI CATG 2 cut(s) 187, 218
HapII CCGG 1 cut(s) 141
HgaI GACGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 2 cut(s) 191, 222
HpaII CCGG 1 cut(s) 141
HphI GGTGA 1 cut(s) 155
HpyCH4V TGCA 3 cut(s) 56, 255, 303
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 2 cut(s) 191, 222
LguI GCTCTTC 1 cut(s) 26
LpnPI CCDG 4 cut(s) 152, 154, 310, 337
MaeIII GTNAC 1 cut(s) 143
MboII GAAGA 5 cut(s) 43, 73, 139, 220, 340
MfeI CAATTG 1 cut(s) 38
MluCI AATT 2 cut(s) 38, 244
MnlI CCTC 5 cut(s) 21, 100, 174, 204, 245
Mph1103I ATGCAT 1 cut(s) 257
MseI TTAA 2 cut(s) 239, 263
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 2 cut(s) 141, 325
MunI CAATTG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 325
NciI CCSGG 1 cut(s) 141
NlaIII CATG 2 cut(s) 191, 222
NmuCI GTSAC 1 cut(s) 143
NsiI ATGCAT 1 cut(s) 257
PciSI GCTCTTC 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 323
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 2 cut(s) 239, 263
ScrFI CCNGG 2 cut(s) 141, 325
SetI ASST 5 cut(s) 111, 229, 237, 289, 299
Sse9I AATT 2 cut(s) 38, 244
StyD4I CCNGG 2 cut(s) 139, 323
TaqI TCGA 1 cut(s) 175
TasI AATT 2 cut(s) 38, 244
Tru1I TTAA 2 cut(s) 239, 263
Tru9I TTAA 2 cut(s) 239, 263
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 90, 140
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.