Rh6CG295600

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0033399
Physical Location & Seq
Reverse (-)
47642188 .. 47642542
355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG295600.1

Sequence Viewer

Length: 288 bp
ATGTCGTGGCTAAGCCATTGGCAGTTTGAGAATGATGAGATAGAGGTTGGGCAAGAGCTACGTTTTTCTCTAGAAATCGAAGATGTTCAGATCTTAATAGAGCTTGGAGTCCAACACGAGCATGAAAGTGAGGGCAAGGCATGTAATGGTATCCAGTCATCAAATCTTGAAGATGGTATCCAATATATGAGGCACCTTATTGGAACCAGGGTGTCCTCATTGGACATGAATCGGCACCAAAGTATCAAATGCGGGCCGGCAAATACTTCCTTCGCAATCATTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

95

Amino Acids

10.81

Weight (kDa)

4.76

Isoelectric Point (pI)

65.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0033399)

Species Orthologous Gene IDs
rosa_samantha Rh6CG295600 Rh6DG287500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 192, 234
AciI CCGC 1 cut(s) 252
AgsI TTSAA 1 cut(s) 170
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 2 cut(s) 58, 103
AluI AGCT 2 cut(s) 58, 103
AoxI GGCC 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 254
BaeI ACNNNNGTAYC 2 cut(s) 226, 259
BanI GGYRCC 2 cut(s) 192, 234
BauI CACGAG 1 cut(s) 116
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 208
BciVI GTATCC 2 cut(s) 161, 188
BfaI CTAG 1 cut(s) 71
BfuI GTATCC 2 cut(s) 161, 188
BglII AGATCT 1 cut(s) 90
BlpI GCTNAGC 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 3 cut(s) 194, 205, 236
BmrFI CCNGG 1 cut(s) 208
Bpu1102I GCTNAGC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 207
Bse118I RCCGGY 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 154
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 154
BshFI GGCC 1 cut(s) 256
BshNI GGYRCC 2 cut(s) 192, 234
BsiSI CCGG 1 cut(s) 257
BsnI GGCC 1 cut(s) 256
Bsp143I GATC 1 cut(s) 90
Bsp1720I GCTNAGC 1 cut(s) 11
BspACI CCGC 1 cut(s) 252
BspANI GGCC 1 cut(s) 256
BspLI GGNNCC 3 cut(s) 194, 205, 236
BspT107I GGYRCC 2 cut(s) 192, 234
BsrFI RCCGGY 1 cut(s) 256
BsrI ACTGG 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 1 cut(s) 90
BssSI CACGAG 1 cut(s) 116
Bst2BI CACGAG 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 254, 258
BstDEI CTNAG 1 cut(s) 11
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstNI CCWGG 1 cut(s) 208
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuI GTATCC 2 cut(s) 161, 188
BsuRI GGCC 1 cut(s) 256
Cac8I GCNNGC 2 cut(s) 254, 258
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 254
CviAII CATG 3 cut(s) 122, 141, 226
CviJI RGCY 5 cut(s) 10, 15, 58, 103, 256
CviKI_1 RGCY 5 cut(s) 10, 15, 58, 103, 256
DdeI CTNAG 1 cut(s) 11
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 206
FaeI CATG 3 cut(s) 125, 144, 229
FaiI YATR 5 cut(s) 123, 142, 186, 188, 227
FatI CATG 3 cut(s) 121, 140, 225
FauI CCCGC 1 cut(s) 245
FspBI CTAG 1 cut(s) 71
HaeIII GGCC 1 cut(s) 256
HapII CCGG 1 cut(s) 257
Hin1II CATG 3 cut(s) 125, 144, 229
HinfI GANTC 2 cut(s) 108, 229
HpaII CCGG 1 cut(s) 257
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 2 cut(s) 71, 167
HpyAV CCTTC 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 3 cut(s) 125, 144, 229
KroI GCCGGC 1 cut(s) 256
KroNI GCCGGC 1 cut(s) 258
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 4 cut(s) 167, 193, 220, 270
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 61
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 2 cut(s) 92, 182
MflI RGATCY 1 cut(s) 90
MlyI GAGTC 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 4 cut(s) 37, 124, 183, 226
MroNI GCCGGC 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 84
MseI TTAA 2 cut(s) 95, 286
MslI CAYNNNNRTG 2 cut(s) 120, 126
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
NaeI GCCGGC 1 cut(s) 258
NdeII GATC 1 cut(s) 90
NgoMIV GCCGGC 1 cut(s) 256
NlaIII CATG 3 cut(s) 125, 144, 229
NlaIV GGNNCC 3 cut(s) 194, 205, 236
NspI RCATGY 1 cut(s) 144
PdiI GCCGGC 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 229
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 3 cut(s) 194, 205, 236
PspPI GGNCC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 90
RseI CAYNNNNRTG 2 cut(s) 120, 126
SaqAI TTAA 2 cut(s) 95, 286
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 208
SetI ASST 5 cut(s) 48, 60, 64, 105, 198
SmiMI CAYNNNNRTG 2 cut(s) 120, 126
SsiI CCGC 1 cut(s) 252
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 206
TaiI ACGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 78
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 2 cut(s) 95, 286
Tru9I TTAA 2 cut(s) 95, 286
TspDTI ATGAA 2 cut(s) 138, 242
XbaI TCTAGA 1 cut(s) 70
XceI RCATGY 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.