Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0034540

Physical Location & Seq

Genomic Coordinates Forward (+)

50113189 .. 50113584

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG316000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGTGGTGGATCCGGGAACAGGGGACATCGTAGGGATGAGGAAGACGCTGGTGTTCTATCGGAACAGAGCTCCCAATGGAATTAAAACTGGGTGGATCATGCATGAGTTTCGCCTCGAGACCCCACACATGCCTCCCAAGGTAATTTCACAATCGTACTTCAGTTCTCTTCCTAGCTATATCGATCATGCACACGCCATCTTATTCTTCTCCATCATTAAGTATAGAGATTCATTCTCTCTCTGTCACGTGATATTGAGAGGTTCTGAAGTGCAAGTTAGCTTAGCTTCCTACATCATCGATCGTTTTGCTAACAGTGTTTTGCCACTTCAGTCATCACTGTCATTGAGAGAGATGGATCATGCATACAAAGAAACAGTCCTTCTAGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

131

Amino Acids

14.89

Weight (kDa)

8.79

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	9 - 39	1.9e-07	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0034540)

Species	Orthologous Gene IDs
rosa_samantha	Rh6CG301400 Rh6CG316000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	5, 18, 104, 366
AcuI	CTGAAG	3 cut(s)	145, 288, 314
AcvI	CACGTG	1 cut(s)	250
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	20
AluBI	AGCT	4 cut(s)	71, 177, 282, 287
AluI	AGCT	4 cut(s)	71, 177, 282, 287
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	4 cut(s)	5, 18, 104, 366
Ama87I	CYCGRG	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	363, 395
AsuC2I	CCSGG	1 cut(s)	15
AvaI	CYCGRG	1 cut(s)	116
BamHI	GGATCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	73
BbrPI	CACGTG	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	73
BccI	CCATC	3 cut(s)	206, 221, 349
BcgI	CGANNNNNNTGC	4 cut(s)	92, 126, 290, 324
BcnI	CCSGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	2 cut(s)	174, 386
BlpI	GCTNAGC	1 cut(s)	283
Bme1390I	CCNGG	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	50
Bpu1102I	GCTNAGC	1 cut(s)	283
BpuMI	CCSGG	1 cut(s)	15
Bsa29I	ATCGAT	2 cut(s)	183, 300
BsaAI	YACGTR	1 cut(s)	250
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	94
BseCI	ATCGAT	2 cut(s)	183, 300
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	94
Bsh1285I	CGRYCG	1 cut(s)	304
BshVI	ATCGAT	2 cut(s)	183, 300
BsiEI	CGRYCG	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	38
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	5 cut(s)	10, 96, 184, 301, 358
Bsp1720I	GCTNAGC	1 cut(s)	283
BspDI	ATCGAT	2 cut(s)	183, 300
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	4 cut(s)	5, 18, 104, 366
BspTNI	GGTCTC	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	5 cut(s)	10, 96, 184, 301, 358
BssT1I	CCWWGG	1 cut(s)	138
Bst4CI	ACNGT	3 cut(s)	317, 342, 379
Bst6I	CTCTTC	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	250
BstDEI	CTNAG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	42
BstKTI	GATC	5 cut(s)	13, 99, 187, 304, 361
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	5 cut(s)	10, 96, 184, 301, 358
BstMCI	CGRYCG	1 cut(s)	304
BstNSI	RCATGY	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
Bsu15I	ATCGAT	2 cut(s)	183, 300
BsuTUI	ATCGAT	2 cut(s)	183, 300
BtsCI	GGATG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	322, 338
ClaI	ATCGAT	2 cut(s)	183, 300
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	5 cut(s)	100, 104, 130, 188, 362
CviJI	RGCY	4 cut(s)	71, 177, 282, 287
CviKI_1	RGCY	4 cut(s)	71, 177, 282, 287
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	283
DpnI	GATC	5 cut(s)	12, 98, 186, 303, 360
DpnII	GATC	5 cut(s)	10, 96, 184, 301, 358
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	73
Eco31I	GGTCTC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	71
Eco57I	CTGAAG	3 cut(s)	145, 288, 314
Eco72I	CACGTG	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	138
EcoT22I	ATGCAT	2 cut(s)	105, 367
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	5 cut(s)	103, 107, 133, 191, 365
FaiI	YATR	8 cut(s)	101, 105, 131, 180, 189, 225, 363, 367
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	5 cut(s)	99, 103, 129, 187, 361
FokI	GGATG	1 cut(s)	49
FriOI	GRGCYC	1 cut(s)	73
FspBI	CTAG	2 cut(s)	174, 386
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	55
Hin1II	CATG	5 cut(s)	103, 107, 133, 191, 365
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	1 cut(s)	14
Hpy188I	TCNGA	2 cut(s)	63, 268
Hpy188III	TCNNGA	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	3 cut(s)	317, 342, 379
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	4 cut(s)	103, 191, 274, 365
HpyF3I	CTNAG	1 cut(s)	283
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	5 cut(s)	103, 107, 133, 191, 365
Kzo9I	GATC	5 cut(s)	10, 96, 184, 301, 358
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	4 cut(s)	6, 27, 35, 75
MaeI	CTAG	2 cut(s)	174, 386
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	5 cut(s)	12, 98, 186, 303, 360
MboI	GATC	5 cut(s)	10, 96, 184, 301, 358
MboII	GAAGA	3 cut(s)	55, 161, 199
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	3 cut(s)	81, 144, 391
MnlI	CCTC	4 cut(s)	33, 125, 144, 254
Mph1103I	ATGCAT	2 cut(s)	105, 367
MseI	TTAA	3 cut(s)	84, 219, 394
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	15
NciI	CCSGG	1 cut(s)	15
NdeII	GATC	5 cut(s)	10, 96, 184, 301, 358
NlaIII	CATG	5 cut(s)	103, 107, 133, 191, 365
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	245
NsiI	ATGCAT	2 cut(s)	105, 367
NspI	RCATGY	1 cut(s)	133
PaeR7I	CTCGAG	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	13
Ple19I	CGATCG	1 cut(s)	304
PmaCI	CACGTG	1 cut(s)	250
PmlI	CACGTG	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	73
PspCI	CACGTG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	10
PvuI	CGATCG	1 cut(s)	304
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	73
SaqAI	TTAA	3 cut(s)	84, 219, 394
Sau3AI	GATC	5 cut(s)	10, 96, 184, 301, 358
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	7 cut(s)	73, 144, 179, 252, 265, 284, 289
Sfr274I	CTCGAG	1 cut(s)	116
SlaI	CTCGAG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	3 cut(s)	81, 144, 391
SspMI	CTAG	2 cut(s)	174, 386
SstI	GAGCTC	1 cut(s)	73
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	3 cut(s)	317, 342, 379
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	3 cut(s)	117, 183, 300
TasI	AATT	3 cut(s)	81, 144, 391
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	3 cut(s)	84, 219, 394
Tru9I	TTAA	3 cut(s)	84, 219, 394
TscAI	CASTG	2 cut(s)	322, 345
TseFI	GTSAC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	322, 345
XceI	RCATGY	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	116
XspI	CTAG	2 cut(s)	174, 386
Zsp2I	ATGCAT	2 cut(s)	105, 367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.