Rh6CG524000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
67901843 .. 67902587
745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG524000.1

Sequence Viewer

Length: 195 bp
ATGGGGGAGCTGCGGTGGAAGCGTGGAGAAGAGGAGACGAGGAGTGAAGCAGAGCTGCAGAGCGAAAGCTGCGGTGGAGGAGACGAGGAGCTCACAGGTATTTATGTTTTAAGGACCTTCTATGCCATTGCTTCTGCCTCGGGGTACATAAGAGTAAAATTCAGAAGTCCAAAGTCACCAAACGGTCAGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.13

Weight (kDa)

5.37

Isoelectric Point (pI)

101.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0026718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11070
rosa_samantha Rh6CG524000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 13, 72
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 1 cut(s) 146
AluBI AGCT 4 cut(s) 10, 55, 69, 91
AluI AGCT 4 cut(s) 10, 55, 69, 91
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 2 cut(s) 29, 75
Ama87I CYCGRG 1 cut(s) 139
ApeKI GCWGC 3 cut(s) 10, 55, 69
ApoI RAATTY 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 168
AvaI CYCGRG 1 cut(s) 139
AvaII GGWCC 1 cut(s) 114
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 42, 56
BcoDI GTCTC 2 cut(s) 29, 75
BfmI CTRYAG 1 cut(s) 56
BisI GCNGC 3 cut(s) 11, 56, 70
BlsI GCNGC 3 cut(s) 12, 57, 71
Bme18I GGWCC 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 138
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 126
BseRI GAGGAG 4 cut(s) 47, 55, 93, 101
BseXI GCAGC 2 cut(s) 42, 56
BsiHKAI GWGCWC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 29, 75
BsmBI CGTCTC 2 cut(s) 29, 75
BsoBI CYCGRG 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 93
BspACI CCGC 2 cut(s) 13, 72
BspMAI CTGCAG 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 24
BstMAI GTCTC 2 cut(s) 29, 75
BstMWI GCNNNNNNNGC 2 cut(s) 19, 69
BstSFI CTRYAG 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 42, 56
BtsIMutI CAGTG 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 145
CviJI RGCY 4 cut(s) 10, 55, 69, 91
CviKI_1 RGCY 4 cut(s) 10, 55, 69, 91
CviQI GTAC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 93
Esp3I CGTCTC 2 cut(s) 29, 75
FaiI YATR 3 cut(s) 105, 123, 149
Fnu4HI GCNGC 3 cut(s) 11, 56, 70
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 11, 56, 70
GluI GCNGC 3 cut(s) 11, 56, 70
HphI GGTGA 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 69
LmnI GCTCC 2 cut(s) 7, 88
LpnPI CCDG 1 cut(s) 81
Lsp1109I GCAGC 2 cut(s) 42, 56
MaeIII GTNAC 1 cut(s) 174
MboII GAAGA 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 1 cut(s) 158
MnlI CCTC 5 cut(s) 25, 33, 71, 79, 148
MseI TTAA 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 19, 69
NmuCI GTSAC 1 cut(s) 174
PkrI GCNGC 3 cut(s) 12, 57, 71
PpuMI RGGWCCY 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 114
PspPI GGNCC 1 cut(s) 114
PspPPI RGGWCCY 1 cut(s) 114
PstI CTGCAG 1 cut(s) 60
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 3 cut(s) 11, 56, 70
Sau96I GGNCC 1 cut(s) 114
SduI GDGCHC 1 cut(s) 93
SetI ASST 6 cut(s) 12, 57, 71, 93, 100, 119
SfcI CTRYAG 1 cut(s) 56
SgeI CNNG 6 cut(s) 35, 51, 97, 108, 151, 153
SinI GGWCC 1 cut(s) 114
Sse9I AATT 1 cut(s) 158
SsiI CCGC 2 cut(s) 13, 72
SstI GAGCTC 1 cut(s) 93
TaaI ACNGT 1 cut(s) 185
TasI AATT 1 cut(s) 158
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 1 cut(s) 194
TseFI GTSAC 1 cut(s) 174
TseI GCWGC 3 cut(s) 10, 55, 69
Tsp45I GTSAC 1 cut(s) 174
TspRI CASTG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 114
XapI RAATTY 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.