Rh6DG008500

Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser Thr consensus motif in nascent polypeptide chains

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
865402 .. 868851
3450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG008500.1

Sequence Viewer

Length: 201 bp
ATGGTGAAGCCTTCGTCATCGTCGTCCTCTACGAGCCAGGACGCCCTTGCCCTTTTCAATTCTCTGAGATCGGCTTACTCCGCCACTCCTACCGCTCTCAAGATCATTGATCTCTATGTTGGTTTCGCTGTATCCACAGCTATCATCCAGGTAATGCATCGTCTCCATTTTCATGTTTTCAATTCGATTCCATCTAATTAA

Protein Analysis

66

Amino Acids

7.13

Weight (kDa)

9.52

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025081)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0251331
rosa_roxburghii Rroxscaffold_7G00216750
rosa_samantha Rh6DG008500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 95
AciI CCGC 2 cut(s) 81, 93
AcyI GRCGYC 1 cut(s) 42
AgsI TTSAA 2 cut(s) 58, 181
AjnI CCWGG 2 cut(s) 36, 147
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 16
BccI CCATC 1 cut(s) 199
BciT130I CCWGG 2 cut(s) 38, 149
BciVI GTATCC 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 167
BfuI GTATCC 1 cut(s) 142
Bme1390I CCNGG 2 cut(s) 38, 149
BmrFI CCNGG 2 cut(s) 38, 149
BmsI GCATC 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 42
BseBI CCWGG 2 cut(s) 38, 149
BseGI GGATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 167
BsmBI CGTCTC 1 cut(s) 167
Bsp143I GATC 3 cut(s) 68, 102, 109
BspACI CCGC 2 cut(s) 81, 93
BspCNI CTCAG 1 cut(s) 57
BsrBI CCGCTC 1 cut(s) 95
BssMI GATC 3 cut(s) 68, 102, 109
BssNI GRCGYC 1 cut(s) 42
Bst2UI CCWGG 2 cut(s) 38, 149
BstACI GRCGYC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 1 cut(s) 144
BstKTI GATC 3 cut(s) 71, 105, 112
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 3 cut(s) 68, 102, 109
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 2 cut(s) 38, 149
BstSCI CCNGG 2 cut(s) 36, 147
BsuI GTATCC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 144
CseI GACGC 1 cut(s) 50
CviAII CATG 1 cut(s) 173
CviJI RGCY 4 cut(s) 10, 36, 74, 140
CviKI_1 RGCY 4 cut(s) 10, 36, 74, 140
DdeI CTNAG 1 cut(s) 65
DpnI GATC 3 cut(s) 70, 104, 111
DpnII GATC 3 cut(s) 68, 102, 109
EciI GGCGGA 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 36, 147
EcoT22I ATGCAT 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 1 cut(s) 176
FaiI YATR 2 cut(s) 117, 174
FatI CATG 1 cut(s) 172
FokI GGATG 1 cut(s) 131
HgaI GACGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 1 cut(s) 176
HinfI GANTC 1 cut(s) 187
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 100
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 21
HpyCH4V TGCA 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 1 cut(s) 176
Kzo9I GATC 3 cut(s) 68, 102, 109
LpnPI CCDG 4 cut(s) 23, 50, 134, 161
LweI GCATC 1 cut(s) 166
MalI GATC 3 cut(s) 70, 104, 111
MbiI CCGCTC 1 cut(s) 95
MboI GATC 3 cut(s) 68, 102, 109
MluCI AATT 3 cut(s) 58, 181, 196
MnlI CCTC 1 cut(s) 37
Mph1103I ATGCAT 1 cut(s) 159
MseI TTAA 1 cut(s) 199
MslI CAYNNNNRTG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 38, 149
MvaI CCWGG 2 cut(s) 38, 149
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 3 cut(s) 68, 102, 109
NlaIII CATG 1 cut(s) 176
NsiI ATGCAT 1 cut(s) 159
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 29
PfeI GAWTC 1 cut(s) 187
Psp6I CCWGG 2 cut(s) 36, 147
PspGI CCWGG 2 cut(s) 36, 147
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 199
Sau3AI GATC 3 cut(s) 68, 102, 109
ScrFI CCNGG 2 cut(s) 38, 149
SetI ASST 2 cut(s) 142, 153
SfaNI GCATC 1 cut(s) 166
SgeI CNNG 8 cut(s) 45, 49, 50, 59, 112, 160, 161, 185
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 3 cut(s) 58, 181, 196
SsiI CCGC 2 cut(s) 81, 93
StyD4I CCNGG 2 cut(s) 36, 147
TaqI TCGA 1 cut(s) 185
TasI AATT 3 cut(s) 58, 181, 196
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 199
Tru9I TTAA 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.